RnoINT0102400 @ rn6
Intron Retention
Gene
ENSRNOG00000009286 | Noxa1
Description
NADPH oxidase activator 1 [Source:RGD Symbol;Acc:1306687]
Coordinates
chr3:2303206-2304305:-
Coord C1 exon
chr3:2304198-2304305
Coord A exon
chr3:2303260-2304197
Coord C2 exon
chr3:2303206-2303259
Length
938 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTATTATTGTGCCCACTAGGTG
3' ss Score
7.55
Exon sequences
Seq C1 exon
AAACAGGTACCACTGCAGCTGCGGCAAGTGCCCAAGGGGGAGGTCTTCCAGCCTCCTCGGCGATACCTGAAACATCTGGAGCCCATGGATTTCCTCGGCAAGGCTAAG
Seq A exon
GTAAAACACCAGGGTGTTTTCCAGCTCAGGGGCCCAGCTGCCAGAACATAGCTGTATCCTGCTCATGGTGTGCTGGTGCTGGCACTGGACATCTCGTGTGTCTACAAGGACAGTTGGGTATAATCTAGGCCACTTGAAAGTCAGAAGGTAGAAAGTGGACACAAGGCTCCTAGGGTTGGGGTGAGTACTAACACACGAGGCTGCAGACTGGAGGCAGAACTTATCGGAAGTCAGTTCAAGGAGGGTTCAGGCCTTTTGATGGGAAACCCTGGTTGGTCCCGCCTTCACCCCATACTCTTCTCCCAGAGGTTGCCAGTGTCTGCCTCTTCTTCTCATGTGTCTGTTTCCATACGTCTGCATAAATAGCAAGGTCCCAGAGTGGGTGGCCAGCCTAGGCTACATCAGCCCCCTAAACCACAGGCTGTGGTGAGTATCCCGCCTCCAAATATAAGACTCAAGAAAACAGTCACTAGCAGTATCACCAAGAATGGCCATTTGGCTTTGCAGTGATGACCCCTGGGCTGGCCACACACCTACGGTCACTTGCGCTGGACCTGCCAACACTATGTGACCATGAGCAGCTGCCTGAGGTGCGCGCTGCTTGTGAGTGTGCCCAGAAGCAAACTCAGTACAGGTGGAGAGGAGAGCGTGTTTGTCCACTCAACAGCGTCCATGAGCACAGCAGGAGACGGTTACAAGAAATGAAAAATATGGAGAACAAGTTATACTAAATTAAGTTGATATTATTAGCACAACTTTCTCTTGGTCATACGTTTGGGTTATTTTGTTTTGTTTTAGCTGTAGTGGTTCAGCAGGCTTGGGCTAGAGTGTATGTAGCCCACACCCTGCAAAGTAAAGCCAGAGAGGTGCTGGGAACTGGGGACCTGGAGGAGCAGACGAGTGGGGCCCTAATCCAGCTGTATTATTGTGCCCACTAG
Seq C2 exon
GTGGTGGCTTCTGTCATCCCTGATGACCACAACTCGGACATCCAGCCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009286:ENSRNOT00000012375:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]