MmuINT0109926 @ mm10
Intron Retention
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25089174-25090277:-
Coord C1 exon
chr2:25090170-25090277
Coord A exon
chr2:25089222-25090169
Coord C2 exon
chr2:25089174-25089221
Length
948 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTGTTCCTGCCCCCACTAGGTG
3' ss Score
10.26
Exon sequences
Seq C1 exon
AAACAGGTACCCCTACAGCTACAGCAAGTGCCCAAGGGTGAGGTCTTCCAGCCTCCCAGGCGATACCTAAAACATCTGGAGCCCATGGATTTCCTTGGCAAGGCTAAG
Seq A exon
GTAAAACGCTAGGGTATTTTCCAGCTCAGGGACTCAGCTGCCAAAATGTAGCCTATGTCAAGCTAATGGTGTGGCTGGCCCCTGCACTGGACATCTAGTATGTTTATGAGGACAGTTAGGTATAGTCTAGGCCATTTGAAAGTCAGAAGGTAGAAAGTGGGCACAAGGCTCCTAGGGCTGGGGTGAGCATTCATTCACACGAGGCTGTAGACTGAAGGCAGAACTTACCAGAAGTCAACATCAAAGGAGGGCTCAGGTCTTTTGATGGGAATCCCTGGTGGTGCTCTCCCTCACCCTATACTCTTCTCCCAGATGTTGCCAGTGTCTGCATCTTCACATGTGTCTGTTTCCATACCTCTGCCATAGACAGCAAAGATGCCAGAAGTGGATGGCCAGCCTGGGCCATATCATGCCCCCTAAACCACAGGCTATGTCGGAGTATCCCACCTCCAAATATAAGAGGAACTCAGGAAAACAGTTACTAGCAGTGTCACAAAGAAGGGTCCTCTTGGCATTGCAGTGATGACCCCTGGGCTGGCCACACACCTGTGGTCACTAGTGCTGGGTCTGCCAACACTGTGTGACCATGAGCAGCCACTTGAGGTGCACACTGCTTGTGAAACTGCCCTGATGCAAACTCAGTACAGGTGGAGAGGAAATTGTATTTGTGCATCTATCAGAGTCCACTTATCACAGCAGAAGACTGTTATAAGAAACAAAAATAGTTAACAAGTTATAATAAAATTAAGTTGATATTATTAGCACAAATGTTTCTCTTGGTCACACCTTTGGGCTGCTTTGCTTTGTTTTAGCTGCAGTGGTTCAGCAGGCTTGAGCTAGATGTAGCCCACACCCCGCAGCATAAAGCCATGGAGGTGCCGGGAATTGGGGACCTGGGGGAGCAGATCCAGTGGGGCCCTAATCCAGCTGTGTTCCTGCCCCCACTAG
Seq C2 exon
GTGGTGGCTTCTGTCATTCCTGATGACCACAACGCCCAGCCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805:ENSMUST00000044018:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types