GgaINT0125345 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:937486-937826:-
Coord C1 exon
chr17:937699-937826
Coord A exon
chr17:937625-937698
Coord C2 exon
chr17:937486-937624
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CGCTGCACCTTCCCACACAGATT
3' ss Score
7.8
Exon sequences
Seq C1 exon
CGGGCGGGGAGCTGCAGGTGAAGCTGCAGAGCGCGGCAGGGCAGCACACGGCGTGGAGCGTGGCAGGGCAGCGGAGCCAAGGCTGGCAAAGCAGCACAGTGCCTTTGGAGAGTCCCAGTGAGTTCCAG
Seq A exon
GTGAGTGGGTGCCCTCCTGGGATGCTGGGTGCCCTCCCTGCACACCGAGCCCAGCGCTGCACCTTCCCACACAG
Seq C2 exon
ATTGTCTTTGAGATCACCTCGCGGATGTGGCCGATGGACGGCACCGTGGCACTGGATGATATTGAGTACAGTGCCACTGGAGGCTGTGACTCCAACCTAGAGGCCCCAGGGAAAGGTGTGGGTCATCCCCAACAACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=NA C2=0.160
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(25.3=100)
A:
NA
C2:
PF0062918=MAM=PD(18.1=63.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCAGCACAGTGCCTTTG
R:
GATGACCCACACCTTTCCCTG
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]