GgaINT0125418 @ galGal4
Intron Retention
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6893627-6893995:+
Coord C1 exon
chr17:6893627-6893742
Coord A exon
chr17:6893743-6893834
Coord C2 exon
chr17:6893835-6893995
Length
92 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
TGTTACTGTACTATTTACAGGCA
3' ss Score
7.63
Exon sequences
Seq C1 exon
CAGATTGCAAGTGTTGGATGGCTCCAGAAGCATTCAGTTTTTCTTTCAGTGATAAGTCAGACATCTGGTCTCTAGGGTGTATCCTACTTGACATGATGACCTGTTTTGTTTTGAAT
Seq A exon
GTATGTAATAATGTTTCATTAAAATATGAGCCCACCACAGAACATCTGTAACTGAGTGTGGGAAAGTTGTACTGTTACTGTACTATTTACAG
Seq C2 exon
GCAGAAGAAATCACTTTGTTACTGCAGGATATAAGACGAGACACCAGCCATCTTGATAGAGTTCTGTCCCTAATGGAAATTGGAGAAAACAGTTCTTTGCCTTTATTCCCAGTTTTATCTATGATGCTACAGATTCAGCCCAGCATGAGAACCACAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175:ENSGALT00000005036:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.9=100)
A:
NA
C2:
PF0006920=Pkinase=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGTGTTGGATGGCTCC
R:
CAAGATGGCTGGTGTCTCGTC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]