GgaINT0125530 @ galGal4
Intron Retention
Gene
ENSGALG00000002855 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr17:7040523-7041294:-
Coord C1 exon
chr17:7041190-7041294
Coord A exon
chr17:7040653-7041189
Coord C2 exon
chr17:7040523-7040652
Length
537 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTCCTGTTTCCCAACTTCAGGTA
3' ss Score
10.39
Exon sequences
Seq C1 exon
AACATGCCGAATGTTCGGGATCACGATGCCTCGGTGTATCTCCGTCTCCAAGGCGATGCCCTTTCCGTGGGTGGCTATGAGTCAAACCCCATCTTCTGGGAGGAG
Seq A exon
GTGAGCGGTGCTGGGAGGCTCTGGGGGGAGCGAGGCGAGTTTGCAGGGGACCCACATCAGTGGGGTGGGTGCAGCAGTGAGCTCCTTATGGCCCCACACTGCCCAGCCTGGGGGTACCGACTGTGGGCTGATTTTGGGAGCTCAGGAGAGCACCATCCCCTTTGGTCTGCAGGTGATGAGGAAACCAAGCAGGGTTCGGGGCTAACCCTACTGTGCTGCTGGGTCCCTGTATCTTAATTCAGGCTCTGCCCCAGCCCTTACGCTGTATTTTTCAATGCCTCTGTCCCATGGAGAGGGACCCCCCTCACCAGATGATGCCCGTTCCCTGCCATGTCCACGATGTACACCAGGACACGCAGGGGCTTTGGGTTTGGTGCTGGCTTTGCACCTCTGTACTGAGCTGTTCATAAAAACCCAGAGACTGGGATCTGCAAAGCGGCTCTATTTTCTGTGACCACAGAGGTTGGTAGGGCTGGGAGGTTCTCACCCATCAGCTGCGCTCTAGTTTGTGTCCTGATTCCTGTTTCCCAACTTCAG
Seq C2 exon
GTATCAGAGAAATTTGCCTTCAGCCTCTTTGACCTGGACTGGGATGTTTTTATGCAGCACATCCAAGGTGCCATCAACCGAGTGCCGGTGCTGGAGAGGACGGGCATCAAATCCACTGTCTGTGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855:ENSGALT00000004499:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(9.4=100)
A:
NA
C2:
PF0126619=DAO=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTTCGGGATCACGATGCC
R:
ACAGTGGATTTGATGCCCGTC
Band lengths:
215-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]