MmuINT0138817 @ mm10
Intron Retention
Gene
ENSMUSG00000009614 | Sardh
Description
sarcosine dehydrogenase [Source:MGI Symbol;Acc:MGI:2183102]
Coordinates
chr2:27234291-27235582:-
Coord C1 exon
chr2:27235478-27235582
Coord A exon
chr2:27234421-27235477
Coord C2 exon
chr2:27234291-27234420
Length
1057 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTCTGTGCTTCCTTTGTAGGTG
3' ss Score
12.46
Exon sequences
Seq C1 exon
AACATGCCCAATGTCCGGGATCACGATGCTTCTGTCTACCTCCGACTGCAGGGGGATGCCTTGTCTGTGGGTGGCTATGAGGCCAACCCTATCTTTTGGGAGGAG
Seq A exon
GTAAGACACCCCCCTCAAGGGTCCCATGGTGGAAAGGCAGAGGTGCCTTGGCCTCACCCAACTTGAGTGCTTCTGAGAGCTAGCACTCAGCTATACCAGAAGCCAGGGTGGGATGGTCTCCCACCTTAGCATGAGACAAAGCCGGGACTCTAGAAGAACTGAGAAATGACCTAGCCCTTTGTTGGCCAGCAGCAATGATGGACCTTCTGAGGCCCCCCCCCTGCCCCTCTGTCCCTCTCCATGGCCACAGTGGGGCCTCAGGACTGGAGGACAATCCAGATGTCCACAAACAGACTGACTAGACGGCGATTCTGGGCCAAATGCCACTTTAGTTCTGGGAAGGGTGGGGGACACTAAGATAATGGCCCCTGCCCCAAACTGTCTGGAGGTAAGGAGTCAAACAAAAGTTCACAGGGTTGAGTAGCGCAATGTGGGTGGTGACTGCACCCCAAGTCTAGTTAGTAGGTCCTAGATCGTCAAAGAGGTCGGGCTGAAGGCACAGGAGGGCTGGATGGCCAGTTGCTAAGGTTGTAGTGGCCTAGGAGTAGCTCCAGCTTGCCCCTGACATAGGATCCCCTCACCCCCTTTAGGCAGGGTCTCTCTATGAAGCTCTAACTGTCTCAGAACTCACTATGTAGACCAGGCTGACCTTAAACTCCCAGTGCCTCCCACCTGCCTTTCTTAAAATCAGAAGGGTTGCCAAAAGACCGAGCACAGGGGAGTGGTTGGGAGGGCAAGCACACGGAGGGTTTTGAGCAGTTGTGGTAGGTAACTGGGAGCTATTGGAGGCTCTACGGAAGGGTGGGCACTGTATGGTTTGAGAGAATGTGTTAAAGGCAAGAAGCTGGAGTCCAGATGGAGACCACAGAAACAGTCCAGGAAAACTAGATGGGGGATGGGCCCAGGAAGGATTGTGAGCCCACAGGTAAATCCCACTCTGTCTCATCTGATCTGCTTCCCTCCCTGGCTGGGGGCTGGAGCTGTGTCATAGGTGGGCCTGGAAGGATCAGTGCTTTTCTCCTGGCTGATTGACAGATTCTCTGTGCTTCCTTTGTAG
Seq C2 exon
GTGTCAGACAAATTTGCCTTTGGCCTCTTTGACCTGGACTGGGATGTGTTCACCCAGCACATTGAAGGCGCCATTAACCGTGTCCCTGTGTTGGAGAAGACGGGGATCAAGTCCACTGTCTGTGGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009614:ENSMUST00000102886:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(9.4=100)
A:
NA
C2:
PF0126619=DAO=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGTCCGGGATCACGATG
R:
TGATCCCCGTCTTCTCCAACA
Band lengths:
207-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types