GgaINT0125535 @ galGal3
Intron Retention
Gene
ENSGALG00000002855 | F1NBJ7_CHICK
Description
NA
Coordinates
chr17:7709970-7710503:-
Coord C1 exon
chr17:7710420-7710503
Coord A exon
chr17:7710084-7710419
Coord C2 exon
chr17:7709970-7710083
Length
336 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
ATCTTCACTCTTCTCCCCAGGTC
3' ss Score
10.84
Exon sequences
Seq C1 exon
GAGCTGCTCCAGCAGGGCTGTGTGTTCCAGGAGAGGCACGGCTGGGAGCGCCCAGGTTGGTTCAGCCCAGGAGGAGCAGCTCCG
Seq A exon
GTAAGCACAGTGCTGAGCGTGAGGGACGTGCTGCCCTGAAAGCAGTGCATCTCTCCACAACAGGTCCATGAGAGCATCCATTAATTCACTCTAACAGTAAGCAGAAGGAGTTCTATGCGTGTCTGCCTGTCCCTCTGCAACAGGCAGCCCCTAACAGGGGGCACTGGTGTCCCTTCTGTACATTAGGAACTGTGGGAAGGGGCATCTAGATGGGGACCTCCCAGCTCACCCATGTCCCACAGGACCCTCTGCTCTCCCTGCATGGTGCGGAGCACCCTTTGGCTTCGTGGTTCTCCCTGTTACCCCCCACCCCCCCATCTTCACTCTTCTCCCCAG
Seq C2 exon
GTCCTGGATTACGACTATTACGGTGCTTACAGCCAGGAGCAGCACAGGGACTACACCTACAACCAGCTGCTGGCAGATGAGTACACCTTCGACTTTCCACCACATCACAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855:ENSGALT00000004499:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCTGTGTGTTCCAG
R:
TGTGATGTGGTGGAAAGTCGA
Band lengths:
182-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]