RnoINT0130699 @ rn6
Intron Retention
Gene
ENSRNOG00000006916 | Sardh
Description
sarcosine dehydrogenase [Source:RGD Symbol;Acc:621125]
Coordinates
chr3:5775718-5778004:-
Coord C1 exon
chr3:5777921-5778004
Coord A exon
chr3:5775832-5777920
Coord C2 exon
chr3:5775718-5775831
Length
2089 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACCTCATTTTCTGCGACAGGTC
3' ss Score
8.71
Exon sequences
Seq C1 exon
GAGCTGCTTGGACAAGGCTGTGTGTTTCAAGAACGACAGGGCTGGGAACGGCCAGGATGGTTCAACCCCCAAGAAACAGCTCAG
Seq A exon
GTGAGCGAAGACACCTGGCCACCAGTTTATGTAACTGGGAGGCCCTGGGCCTCCCATACCCTTCCTCATCTCAGCATCCTCCCAGCCACCCAAGTCAGGCTGCTCCAGCGTGCCTCGGGCTGTGGCGACAGGTCAGTAGTCTGCACCCAGGAAGCTGGGAGAGTGATCTGCACCTCAGTGGTGAGGCTCCTTTAAAGGCTGGCCTGCTTACAGTGGTCAGGTTTTCTGTGCCCACGTGGGCAAGCACTGGATGCCAGCACAGACCCACAGTGTGGATAGGCTGGAGGATCCCCCTGGTTCTAGGAGGAATGCAGGCCCTTTTCACACATTGCTCAAGAATGTATATTTGGCAACACCAACTGTTAGTAGCTGTTAGTGGGAGGAATTGTGCCTCGGTGTGTCAGTTTATCCACTGAACCATCCCACATGCTGGCCTCTGGGATGCTGTAGGGGCCTCCCCAGAGCTCCCTAGGAACAGCCCCTGGGAGCAGACCACAGGGGCTTTGAGGCCCACACCTAGGTGTGTGAAAGTTTGCCCCTTCCTGCTGATGCAGTGTCCCATCCCATTCCAGTGCAACCCTCTTCCAAATCCTCGGTTACCCAGATCCATGACTCAGTGCAGGGCATACTCAGTAACAGGGTCTTGTCTTTCATTGGTCCTGGAGGCAGAGTGGGCAGGGTGGGTTCAGCACCTCTGCTCTGGAGGTCTCAGGCAAGTAGAATTGCTTCTCATCAGGCTCCTTGGTCCCCAGATGAGAAGACTTTATACCCTACCCAGGAGCCAGTCTGGAAAACCTTGTAGGGCTAAAGCAGATGGGACATTCCTTCTAGGGCCCCAGAGTCCAGGGGAAGTACGTCTGGCTGGGAAAGGAGAGGTACTGGGAAGGGCCTTGAAGATGTCACGGCTGCAGGGGCACTGGGCATAACAGGTTGACTAAGGCAGATCCTCCCACTCCTGGAGCTCAACTCTTATTCCAAGAAGTGAGTGAAGCCTGTGGTTAGTGTTGTAGCTGGGGGCAGGGGGATCCACAGCTCCTTTGTTTACCCTAAGTGGGGAGGAAGTCACTGAAGTCACAGAGTTACAGGGACGGCATCTGACCAATGTGACTGAACTCAGGAGAGGGTGGAACAGGGGAGAGGAACCAGACACTGTAGCTTTCCCAGAATCTCCTAGGACCAGACACCAATCAGACCTGCCTAGCTTCATGCCTTGGCTCCTTAGCTTGGTCTGCACCTTGGGGCGAGCTTAACCACCTGGGATTCGGCTTCTCTGTCTGCAGAATGGGTGGCCCTCCTTGGGAGTTGTGGGCACTGTCAGTGGGGGTTGGGGGTGTCATGAATTTTCATCTCTGTGGTGGTTCCTACCCACACTTTCACCCTGCACCTGATGTCCTGGCATCAGGTGGAAGCCCTCACAGTTGCCCAAGTCCCTCTCCAGCTCACTCGGTATCTAGTCTTTTCTCTATCCTCCAGTCAGAACCAGTAAGGCAGGGATTAAGCTGTTATACGAACAATCATCCACGAGTTACGTGAGCCGTACAAATCTAACCAACTTCTGGGGGAGATTTATGGAGGACAGGACCAGGCCTGTGTCACGTTCACCCTTGTATCTGCAGAACATAGTGAGCATCCACTGAGCAGTGGGCCCAAGCCTGCTGTGGAGGGAGGAGAGAGAGAGAAGGGAGGGAGTGCGTGAGGTACTATTCTTACTGCTGTGCCATGGGAAACAGCTTAAGGGAGGGGGCCTCTCTATCAGCAGGACAGGGTGTCATAGCAGGAAGGCATGGTGGTGGGAACTGAGGCAGCTGGTCACACTGTGTCTTCAGACAGGAAGGGGGGAGCAGAAAGGAAGTGGGACTGAGCCATAAAGTCTGGACCTCCCATCCTCTACCTCCAAAACATCCCGCAGCCCCCAAACAGCATCGCCAGATGAGGACCAAGTCCTCGAATGTGAGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACTTTCAGGCTACGACAGGGAAGGAGGAGGAAGGCAGAGTAAAAGATGACCTCATTTTCTGCGACAG
Seq C2 exon
GTCCTAGACTACGACTACTATGGGGCCTACGGACACCAGGCACACAAGGACTACGCCTACAGCAGGCTGCTGGGCGATGAATATACCTTCGACTTCCCACCCCACCACTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006916:ENSRNOT00000009555:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]