MmuINT0138803 @ mm10
Intron Retention
Gene
ENSMUSG00000009614 | Sardh
Description
sarcosine dehydrogenase [Source:MGI Symbol;Acc:MGI:2183102]
Coordinates
chr2:27224969-27227160:-
Coord C1 exon
chr2:27227077-27227160
Coord A exon
chr2:27225083-27227076
Coord C2 exon
chr2:27224969-27225082
Length
1994 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCCTCATTTTCTGTAACAGGTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GAGCTGCTTGGACAAGGCTGTGTGTTTCAAGAGCGACAGGGATGGGAACGGCCGGGATGGTTCAACCCCCAGGAAACAGCTCAG
Seq A exon
GTGAGCAAAGACTCTTGGCCACCGGTTTATGTAACTGGGAGGCCCTGGGCCTCTCATACCCCTTTCCATCTCAGCATCCTCCCAGCCACCCAAGTCAGGCTGATCCAGTGTGCCTCAGGCTGTGGCGACAGGTCAGTTGTCCGCACCCAGGAAGCTGAGAGAGTCCTGAGCACCTCAGCGGTAAGACTCCTTTAAAGGCTTGCTTGCAGTGGCCCGGCTTTCCACACCCACATGGGCACGCCCTGGATGCCAGCACAGACTCACAGTGTGGACAGACTGGAGGATCCCCCTGAGGAGGAATGCAGGCCCTTTCACACACTGTTCGAGAATGTATATTTGGCAACACCAACTGTTAGCTGCTGTTAGTGGGAGGAACTGTGCCTCAGTGTTTCAGTTTATCCACTGAACCATCCCACACGCTGGCCTCTGGGATGCTGTAGGGGTCTCCCCAGAGCTTCCTAGGAACAGCCCCTGAGAGCAGACTACAGAGGCTTTGAGGCCCACTTGTGTGCAAATTAACCCTTTCCTGCAGATCAGCCCCATCGCGTTACAGCGTGACCCTCATCCGGCTTCTCAGTTAGCCAGGTCCACGACTCACTGCAGGGCAAACTCAGGGCCTCAGTAACAGGGCCTTTTCTCTCACTGGTCCTGGAGGCAGAGTCGGCAGGGTGGGCTCAGAGCCTCAGTCCTGGAGGTCTTAGGCAAGGAGAGGTACTTAGTGGGATGGGAAGCCTCGTGATCCTCCAGTGAGAAGACTTTATATCCTACCCAGGAGCCAGTCTGGAAAACCTTGTAGAGTTAAAGCAGATGGATATTCCTTCTAGGGCCTCAGAGACCAGGGGAAGTATGTTTGGCTGGAGAAGGAGAGATACTGGGGAGGGCCTCAAAGATGTCATGGCTGACAGGGGCACTGGGCATAACAGGTTAACTAAGGTAGATCCCCGGTTCCCGGAGTTCAGCTCTTATCCCTGAAAGGTGAGTGAAGCCTACAGTTAGAGTTGCAGCTGTGGAAGAAGAGATTCATAGATTCTTTATTCACCTCTGCAGTGGGGAGGAAGCCACTCAGAGCCTGAGGTCACAGAGGAGGGGGACAGGGAAGGCATCTGACCCATGTGACAGATCTCAGGGGATGGTGGGACAGTAGAGAGGAGCCAGACACTTGTGCCTTCTCAGAGTTTCTTAGGAACAGTCACAGATACCAGTCATACCTGCCTAGCTTCATGCCCTGGCTTCTTAGCTTGGTCTAAACCTTGGGGCGAATTTAACCACCTGGAATTCAGATTCCCCCATCTGAAGAATGGGTGGCCCTCCTTGGGAGTTTATGTGGGCCCTTTGAGTGGGGATTTCATGACACCATCTCTGTGGTGGCTCCTACCCACACTTTCACCCTTCCCCTGATGTCCCAGCATCAGGCGGAAGTACTCACAGTTGCCCAAGTTCCTCTCCAGCTCACTTGGTATCTAGGCTTTTCTCTATCCTCCAGTCAGAACCAGTAAGGCAGGGATTAAGCTGTTATCTGAACAGGCACCTTTGTGTTACCTGATCCATTAAAATCCACTAACTGTTCCCCGAGGGAGCTTTATGGAGGACAGGACCAGGCCTGTGTCATGTTCTTCCTAGTATCTGCTTGTGGAGGGAGGAGAGAGAAGGGAGGGAGTGTGTGAGATGTTGTTCTTACTGTTGTGCCCAAATGGCCACAGGATACAGTTAAGGAAGGGGGCCTCTATATCAGCAGGGCAAAGCGTCATAGTAGGGAAGACATGGTGGTAGGAACGGAGGCGGCTGGTCATATTGTGTCTTCAGATAGGACGTGGGGAGCAGAAAGGAAGTGGGACTGGGCTATAAAGTCTCAACCTTCCATCTTCCCCCAAACAGCATCACCAGATGAGGACCAAGTGCTCACTTGTGAGCCTGTGGGAGACATTTTACCTTCAAGCTACAACAGGGAGGGAAGAGGAAGGCAGAGTGAAAGATGGCCTCATTTTCTGTAACAG
Seq C2 exon
GTCCTTGACTACGACTACTACGGGGCCTACGGAAACCAGGCACACAAGGACTACACCTACAGCAGGTTGCTAGGCGATGAGTACACCTTCGACTTCCCACCCCACCACCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009614:ENSMUST00000102886:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCTTGGACAAGGCTG
R:
CATGTGGTGGTGGGGTGG
Band lengths:
198-2192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types