GgaINT0125629 @ galGal3
Intron Retention
Gene
ENSGALG00000004659 | ZER1
Description
NA
Coordinates
chr17:5880998-5881490:-
Coord C1 exon
chr17:5881449-5881490
Coord A exon
chr17:5881118-5881448
Coord C2 exon
chr17:5880998-5881117
Length
331 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CTGTTTCTTCATCTTTACAGTGT
3' ss Score
9.3
Exon sequences
Seq C1 exon
ACAATGCTAAAATTGATTCAGAAGAAGCTGGCTGATAAAACG
Seq A exon
GTGAGTGTTTCCCACTAAAATGTATACATCATGTTTTCTTTACTCTGACTTAGGCATGGAGATAGCCTGGTGCGCCAGCCCAGCTTCTCTACCTAACGTGGGACATCCCAGCTGGCGCTGCAGAATTTGCTGTCGCAGTGGTGAGGGCTGAAGGGACAAACATAGCAGGGAGGCAAATAATTAAAAACAAAAACCCACTTGCTGAAAAGCTGAAAACGAATAACAAGATTTTCTTACCTCTGGAGTCATCTGGGGTGATGTCAGAGATGAAGCAAGTATTTGGTTTGCACCAGGCTCTTACATCAGCAAAGCTGTTTCTTCATCTTTACAG
Seq C2 exon
TGTGATCAGGTGATGGAGTTCTCATGGAGTGCCCTCTGGAATATTACTGATGAGACTCCTGACAACTGTGAGATGTTCCTCAACTACAGCGGTATGAAACTGTTCTTGGAGTGCTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004659:ENSGALT00000007424:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]