BtaINT0164250 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010208 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr11:99263312-99263632:-
Coord C1 exon
chr11:99263591-99263632
Coord A exon
chr11:99263432-99263590
Coord C2 exon
chr11:99263312-99263431
Length
159 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
GAGCCCTCTCCCCGCTTCAGTGC
3' ss Score
5.41
Exon sequences
Seq C1 exon
ACCATGCTGAAGCTGATTCAGAAGAAGCTGCTGGACAAGATA
Seq A exon
GTAAGTCGAATCTTCGTGGAGCCACCCGCCCCCTCCCCTCGGCTGAGAGGGGACTGGTTTGCCCTGGGGGTGTGTGCCTGTGTCCAGGGAACACTCCCCTCACCGGGTGCCTGTGGGCCCGTCCCGGCACACCTGTGCTGAGCCCTCTCCCCGCTTCAG
Seq C2 exon
TGCGATCAGGTGATGGAGTTCTCCTGGAGCGCCCTGTGGAACATCACAGACGAGACGCCCGACAACTGCGAGATGTTCCTCAACTTCAACGGCATGAAGCTGTTCCTGGACTGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010208:ENSBTAT00000013468:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=FE(7.1=100)
A:
NA
C2:
PF032249=V-ATPase_H_N=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGCTGAAGCTGATTCA
R:
CTTCAGGCAGTCCAGGAACAG
Band lengths:
162-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development