RnoINT0167577 @ rn6
Intron Retention
Gene
ENSRNOG00000025832 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:RGD Symbol;Acc:1310284]
Coordinates
chr3:8668511-8668772:-
Coord C1 exon
chr3:8668731-8668772
Coord A exon
chr3:8668631-8668730
Coord C2 exon
chr3:8668511-8668630
Length
100 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
GAGCTGTGCCTCCCCAACAGTGT
3' ss Score
6.37
Exon sequences
Seq C1 exon
ACCATGTTGAAGCTGATCCAGAAGAAGCTGCTGGACAAGACG
Seq A exon
GTAAGCGAGCCCAGCCCACTCTGCCCTCTCCCTAGAGGCTTCTGCCAGAGTTGGCCATGTGTCCTCCGGAGGACAGAACTGAGCTGTGCCTCCCCAACAG
Seq C2 exon
TGTGACCAGGTCATGGAGTTCTCCTGGAGCGCTCTGTGGAACATCACGGATGAGACTCCAGACAACTGTGAGATGTTCCTTAACTTCAACGGCATGAAGCTCTTTCTCGACTGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025832:ENSRNOT00000035002:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTTGAAGCTGATCCAGA
R:
CTTCAGGCAGTCGAGAAAGAGC
Band lengths:
162-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]