HsaINT0185336 @ hg19
Intron Retention
Gene
ENSG00000160445 | ZER1
Description
zer-1 homolog (C. elegans) [Source:HGNC Symbol;Acc:30960]
Coordinates
chr9:131503814-131504120:-
Coord C1 exon
chr9:131504079-131504120
Coord A exon
chr9:131503934-131504078
Coord C2 exon
chr9:131503814-131503933
Length
145 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GCCCTGCCCTGCCCTCACAGTGT
3' ss Score
9.6
Exon sequences
Seq C1 exon
ACCATGCTGAAGCTGATTCAGAAGAAGCTGCTGGACAAGACA
Seq A exon
GTAAGTCAAGTCTTCACGAAGCCACGCTACCCTTTCCCCACCTCGCAAGGGGCCTGGGCTGCCCCTGGGGGAGGTCTGTGTTTTGTCAGGGGCCCCCCTCCCCGGGTACCAGGAGCCTTGGCTGAGCCCTGCCCTGCCCTCACAG
Seq C2 exon
TGTGACCAGGTCATGGAGTTCTCCTGGAGTGCCCTGTGGAACATCACAGATGAAACTCCTGACAACTGCGAGATGTTCCTCAATTTCAACGGCATGAAGCTCTTCCTGGACTGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160445-ZER1:NM_006336:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=FE(6.0=100)
A:
NA
C2:
PF032249=V-ATPase_H_N=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGCTGAAGCTGATTCA
R:
CTTCAGGCAGTCCAGGAAGAG
Band lengths:
162-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)