GgaINT0125754 @ galGal3
Intron Retention
Gene
ENSGALG00000008984 | C9orf86
Description
NA
Coordinates
chr17:993474-994843:-
Coord C1 exon
chr17:994703-994843
Coord A exon
chr17:993586-994702
Coord C2 exon
chr17:993474-993585
Length
1117 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCTCTTTGCCTTTCTGGTTGAGA
3' ss Score
-2.12
Exon sequences
Seq C1 exon
GACATTTAACTATATTCTGAGGGAGCTTCCTAAAGTGCCGACCCATGTTCCAGTGTGCGTGCTTGGGAACTACCGAGACATGGGGGAGCACCGGGTCATTCTGCCTGGTGACGTGCGGGACTTCATTGACAATCTGAACAG
Seq A exon
GTAACTGGGGGTGGCATCCTGCTCTTCAGACAGAGGAGCAGGCTTTCACTGTTCGCTGTCATCATCCATAGAGAACTGTTGCCGCTGTGTTTGAAATCTGCATCACATTTATCCTCCAGCCTTCAGCATCTCCACAGAATGTTTTCTGGGTACAGCCAAATCATACTCCTCCTTTGCCATCCAGGCAAGGTTTTTCATCTTAGAGGTCTCTGAGGCGCACTGTGACATAAGTTATTACTTATTGATCAGCATTCAATAGAAAGTACCTTTCAGTGTGGGTTTATGTTTTTAAGGCAAATTTTCATTTTCTCAGTCTTTATGACTGTTATGCATACAGCAATGGTATCAATATCGAGACTTGATTCTGTACAGTAGTCATTTCTTCACAAATATATCTCTATATGTGACTCAGCCGAGTTTAATGCATAGTGCTGATGCTTGAGTAGGTGACTGAATGTAGGTGTGCTTCTTGTTTTCGAAATAGAACCTTAACTGAGAAATGAATAGCTTATCTTTCTATGAACCCCCTCCCAGTTTAGTAAACCAATGAGCCAATGTCCTGACGCAGTATCTCTCAGTCTACCATGACACTGCAGCCCCCCAGCAGCTGCATTCCAGCTTTCTCTGCTGCCCTTCAGGAGGGACAGAGAGTCTGATTAAAAGTGTGGAGTTGAATTCCTCCGTGTGGAAAAAATTGTACCTGTTGACGTTCATTGGTGCTTGCTGAATGTTTATGGAGACCAGACAGTGGTGTCGGCGCAGTGAGGTGGCGGGAGGGGGGAGGTGCATTTCAGCAGTGGAACATGGCTTGTGTTTCATGTTGCTGTTGCCATTTGGCCATGGTCAGCTTTTGCACCACAAAATGAAGAGTGTCTCAATCAGCTCATCCATGCAAGTCAGCTAATGGTGGTAATTTTTGAAACACATCATTTTGTAGCTGAGCATTTGCTCTATCAAATATTATTATCATGCTCTTTGTATCTGTTGTAGTTTCCATGGAAATAAATAGGAGACATTACTTTTGGAGGATTGTTCATGGAATGTAATTCAGCAAGTGTCTCTCCTGTGTGTATGCATGTCCTTTGTATGTTTTTTTTTCTCTTTGCCTTTCTGGTTG
Seq C2 exon
AGACAGGCCTCCTGGCTCCTCATATTTTCGCTATGCTGAGTCTTCCATGAAGAACAGCTTTGGCCTCAAGTACCTGCATAAGTTCTTCAACATCCCCTTCTTGCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF084778=Miro=PD(19.3=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAACTATATTCTGAGGGAGCTTCC
R:
CAGCTGCAAGAAGGGGATGTT
Band lengths:
246-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]