DreINT0123783 @ danRer10
Intron Retention
Gene
ENSDARG00000079046 | rabl6a
Description
RAB, member RAS oncogene family-like 6a [Source:ZFIN;Acc:ZDB-GENE-030131-6174]
Coordinates
chr5:5155902-5157051:-
Coord C1 exon
chr5:5156911-5157051
Coord A exon
chr5:5156008-5156910
Coord C2 exon
chr5:5155902-5156007
Length
903 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TTTCCTGCTTTTGCTTTCAGACC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GACATTTAATTACATTCTTAGGGAGCTGCCAAAAGTGCCAACGCACATCCCAGTGTGTGTCCTGGGTAACCAACGGGACATGGGCGAGCACAGGGTCATCCTACCTGATGACATCAGAGACTTCATCAACAGTCTGAACAG
Seq A exon
GTGGGCAGTTCAAGATTAACTCTCAACACTAGGAGCTTACAGAGTCTCGTAGTACAACTTATGGTGAGTTCAGACTGTACGATTTTTAAAGTAGCAACAGATGTTTTCACACTGCATGACTATCTGAGGTAGCGTTCTGTCACGGCTGTGTGGAAACAATGTAAGGGTCACATAGTATATCATGTGGTAGTTTTGAAGGGAATAAGCAATTTGTCTAAGCCCAGTCGTGGAATTGCTCACGTCAAACAGACATGGGTGCTCCTTCCAAATTTCCACTAGTTTTTCCTCCATTTCTTGCGTCCAAATAGACCGAAAAGAAGCCCTTTTAACTTCTCCCTCAACCTCCCGCTGGCCTGCAGATACCCACACTAGTGGATGCTGCTGTCTCATTGGCTGTAGGTAATCGCTAATGTTATTTTCAATCAGAACTCATTTCACAAGGCATGATTTTGAATTGCCAATAGCTTCTGATATTTAGCATGCCAAATATCTCAAGGGTGTAAGAGACTCGTCAGTGATTCTCTGATTGCATCTTTGATAGTTCACACTGTGTGATTGTCACTCACATGAACGAGCTCTGATTTGCCTGTGATTTCAGACATTTGTTGGCGATTTCTCAAAATCTGTCGATGTGTCAAAATCGGGGCTAAAATCATGCAGTTTAAACTCATTTAAAATGATTAAATAAGGTATTTTACACACATTCTGAGTGAAACAATTCATATATTCGCTAACAATCAGGCATTAGGGCTATCAAAAGTTTCATTATATACTGGCAAGATCTGTATTTAATAATGTTACTGACAAAAGGTTTTTTTCATCTTCCTTATAAAAACAATTGTCTCTAAATATACTAAGCAAAGCTGTTATGAATCATGCCACGTTTCCTGCTTTTGCTTTCAG
Seq C2 exon
ACCTCCAGGCTCCTCCTACATCCACTATGCCGAGTCCTCCATGAAAAACGGCTTTGGTCTCAAATACCTCCATCGCTTCTTCAACATCCCGTTCCTGCAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079046:ENSDART00000113716:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF084778=Miro=PD(19.1=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACATTCTTAGGGAGCTGCCA
R:
CTGTAGCTGCAGGAACGGGAT
Band lengths:
238-1141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]