HsaINT1028733 @ hg38
Intron Retention
Gene
ENSG00000196642 | RABL6
Description
RAB, member RAS oncogene family-like 6 [Source:HGNC Symbol;Acc:HGNC:24703]
Coordinates
chr9:136831721-136834340:+
Coord C1 exon
chr9:136831721-136831861
Coord A exon
chr9:136831862-136832261
Coord C2 exon
chr9:136832262-136834340
Length
400 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCTTTTTTCCTTTCTGAAAGCAG
3' ss Score
5.14
Exon sequences
Seq C1 exon
GACCTTCAATTACATTCTCCGGGAGCTTCCAAAAGTGCCCACCCACGTGCCAGTGTGCGTGCTGGGAAACTACCGGGACATGGGCGAGCACCGAGTCATCCTGCCGGACGACGTGCGTGACTTCATCGACAACCTGGACAG
Seq A exon
GTGGGTGCGGTGGCCCTGCTCCCGAGGGACCCTGCCCGGTGCTCCGGTGTGCGGGGGAGGGTGCTGAGGCAGAGGCCCAGGGAGGGGTTAACGTTAGCATGGGGCCCGGCGGATGTGGGTCTCGCCGCTGAGTGGGGCTCACTGAAGCCTGGGTCTCCCCGATGGCAGGGCCGGGAACTGTGTGCTGGGGAACTGTGTGCCAGGGTGAAGTGCTGGCACTGTGGGGTCACCTGCAGAAGGGCACTCGGCTTAGCTGCTTAGCAGGGCTCAGCAGGGTCCTGTGGCCTCAGGAGCCTGCAGGAGGAGGGAGGGCAGTGCGGACCCACAGCTGTGGGCCCAGGGGTGATCCTTGGCACCAGGGCAAGGGTCTTTCTCTTGCATCTTTTTTCCTTTCTGAAAG
Seq C2 exon
CAGACCTCCAGGTTCCTCCTACTTCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTAAAGTACCTTCATAAGTTCTTCAATATCCCATTTTTGCAGCTTCAGGTAAGCACTCACCACGTGGGGTGGAGTGGCTGCTGGTCTCTCACCTCCTTCCAGGTGTCTCCTGTGTAGCAACGGGTCTCCCTCCTAACCCCTGAGAAAGCTGTGGACCTGCTCGGAGATTGGCTGCTGGCAAGGGCCCAGCGTTCTACTGCACCTGCCTGCTCTGGGTGGCAGAGGGTACAGGGTCCTGAGGGCTAGACCCAGTCCCAGGAGCCCCTCCACCTCTGCGGGGACCCCTTGCTCAGTTTCCCCCAGTGTTTTTGGTTGTTTTTGTTTGTTGAGATAAGGTCTTGCTGTGTGGCCCAGGCTGGAGTGCAGTGGCGCAATCATGGCTCACTGCGGCCTCAAACTCCGGGGCTCAGGCAATCCTCCCACCTGTCTCCCAAAGTGCTGGGATGCCAGGCGTGAGTCACCGAGGTACTCGCTGTTCACATCTCACATTTCCCTGGTGCTTGTGTCAAAACCAAGGAACCAACTTTGGCCTACGGACTAAACTCACTTTCCTTTGTAGAAACAAGGGCCAGGCCAGCTGTGGCTGCAAAGTAGCCCAGCAAATGATGAGGCTTGAACCTCCTCGCCCTGGGCTGCCCTGATTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCTGACTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCACCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGATCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGGACCTGAACCTCCTTGCCTGGGCTGCCCCGCCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGTACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGACTGGGTCTGGGGGACCTGAATCTCCTCACCCTGGGCTGCCCCAGCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGACTGGGTCTGGGGGACCTGGGGCCCAGCTGCAGCTGCAGCAGCCTTGGTCTTTCTCCAGAAGGATGTCAGGCTTGCCCAGGAAAGGGGCTGTGCTGTCGTCCTGGTGTCAGAAGAAGTGAGGATGCCTGCAGGCTGGGACTGCTGCTGGGGACGTTTGGGTTGGAAGGAAGGCGGCAGTCAGACTTGTCCTGTGCCGGCACTGCTGGGGAGGCCCCTCCTTCCTGCAGAGCCGTCCCCTCATCACTGGGTTGATTACTCCTTAGAGAGCTCCCCACTGCTCAGCTGCTCCATTCCCTAATGGTTTGCCCTCCAAACCCTTCCAAAGCCTCCCAGGGAGAGAACGGGACCCTGGACAGAGTCTTGAGCTGGAAGCGTAGGGCTGAGCTGTGTGTGACTATCCTTTTGCTATGGATGTGTTCAAGCAGATCTGATGTCCTCGCCTGTCTCAGCAGCGGGACCCCTGTTTCCTCTTTGTCTTGCCCCTGGATTGCCTGGAAGCAAATTTCAGGCCTTCTTTATGTCACCTAAAAATATTTCAAACACATCTCTAAAAAAATCAGTTGTTTTTTTAACCTGACCGTAGTACCTAATGTAATACCGCATGTTAAACTCACAGAAGGTTTTTCTTGGAGAAATAAGCCACAATAACAAATTGAAAAAATAAAATTCCCAAAGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196642:ENST00000436380:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=PD(19.3=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGGAGCTTCCAAAAGTG
R:
GAGCAGGTCCACAGCTTTCTC
Band lengths:
348-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains