GgaINT1001335 @ galGal4
Intron Retention
Description
NA
Coordinates
chr17:609664-611032:-
Coord C1 exon
chr17:610892-611032
Coord A exon
chr17:609776-610891
Coord C2 exon
chr17:609664-609775
Length
1116 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCTCTTTGCCTTTCTGGTTGAGA
3' ss Score
-2.12
Exon sequences
Seq C1 exon
GACATTTAACTATATTCTGAGGGAGCTTCCTAAAGTGCCGACCCATGTTCCAGTGTGCGTGCTTGGGAACTACCGAGACATGGGGGAGCACCGGGTCATTCTGCCTGGTGACGTGCGGGACTTCATTGACAATCTGAACAG
Seq A exon
GTAACTGGGGGTGGCATCCTGCTCTTCAGACAGAGGAGCAGGCTTTCACTGTTCGCTGTCATCATCCATAGAGAACTGTTGCCGCTGTGTTTGAAATCTGCATCACATTTATCCTCCAGCCTTCAGCATCTCCACAGAATGTTTTCTGGGTACAGCCAAATCATACTCCTCCTTTGCCATCCAGGCAAGGTTTTTCATCTTAGAGGTCTCTGAGGCGCACTGTGACATAAGTTATTACTTATTGATCAGCATTCAATAGAAAGTACCTTTCAGTGTGGGTTTATGTTTTTAAGGCAAATTTTCATTTTCTCAGTCTTTATGACTGTTATGCATACAGCAATGGTATCAATATCGAGACTTGATTCTGTACAGTAGTCATTTCTTCACAAATATATCTCTATATGTGACTCAGCCGAGTTTAATGCATAGTGCTGATGCTTGAGTAGGTGACTGAATGTAGGTGTGCTTCTTGTTTTCGAAATAGAACCTTAACTGAGAAATGAATAGCTTATCTTTCTATGAACCCCCTCCCAGTTTAGTAAACCAATGAGCCAATGTCCTGACGCAGTATCTCTCAGTCTACCATGACACTGCAGCCCCCCAGCAGCTGCATTCCAGCTTTCTCTGCTGCCCTTCAGGAGGGACAGAGAGTCTGATTAAAAGTGTGGAGTTGAATTCCTCCGTGTGGAAAAAATTGTACCTGTTGACGTTCATTGGTGCTTGCTGAATGTTTATGGAGACCAGACAGTGGTGTCGGCGCAGTGAGGTGGCGGGAGGGGGGAGGTGCATTTCAGCAGTGGAACATGGCTTGTGTTTCATGTTGCTGTTGCCATTTGGCCATGGTCAGCTTTTGCACCACAAAATGAAGAGTGTCTCAATCAGCTCATCCATGCAAGTCAGCTAATGGTGGTAATTTTTGAAACACATCATTTTGTAGCTGAGCATTTGCTCTATCAAATATTATTATCATGCTCTTTGTATCTGTTGTAGTTTCCATGGAAATAAATAGGAGACATTACTTTTGGAGGATTGTTCATGGAATGTAATTCAGCAAGTGTCTCTCCTGTGTGTATGCATGTCCTTTGTATGTTTTTTTTCTCTTTGCCTTTCTGGTTG
Seq C2 exon
AGACAGGCCTCCTGGCTCCTCATATTTTCGCTATGCTGAGTCTTCCATGAAGAACAGCTTTGGCCTCAAGTACCTGCATAAGTTCTTCAACATCCCCTTCTTGCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF084778=Miro=PD(19.3=54.2),PF0465211=DUF605=FE(13.2=100)
A:
NA
C2:
PF0465211=DUF605=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAACTATATTCTGAGGGAGCTTCC
R:
CAGCTGCAAGAAGGGGATGTT
Band lengths:
246-1362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]