RnoINT0123493 @ rn6
Intron Retention
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2816467-2817100:-
Coord C1 exon
chr3:2816960-2817100
Coord A exon
chr3:2816573-2816959
Coord C2 exon
chr3:2816467-2816572
Length
387 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTTCTTTCTTTGAAAACAGACC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GACCTTCAATTACGTTCTCCGGGAGCTTCCCAAAGTGCCAACCCATGTGCCTGTGTGTGTGCTGGGCAACTACCGTGACATGGGTGAGCATCGAGTCATTCTGCCAGACGACGTGCGTGACTTCATTGAGCACCTGGACAG
Seq A exon
GTGGGTGCTACCACTTCTGCTCCTGTGATGCACTCTGGTGGTGTCGGGGAAGCTCGTAGACACTGGAGCAGTACAGTACAGGCCGTGTCTTAGCCTGTGTTGGAGATAGGATGACAGCACCTGGCCAGACAGGGTGAGGAGTTCAGGTCCCCGGGGGATGGTAATGCTGTAGAAGACCGGAAGACCTTATATGCCAGGACTGTGGGCCCCGCCTGGCTCTTGTCTGGCTCTTCAGACCACCCCAGGAAGTGTGCAGCAGAATGTCCTTAGGAACTGGCTGCCGGAAGGAGGCTGGGTAGGCAGGATGCCTTAGGCTTAGGTGTGGCCCTGGACAATGGGGCTGAGCTACACTGCCTGTCAAGTTCCTTTTTCTTTCTTTGAAAACAG
Seq C2 exon
ACCTCCAGGTTCCTCCTATTTCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTTGGCCTAAAGTATCTGCATAAGTTCTTCAACATCCCATTTTTGCAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795:ENSRNOT00000065410:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=PD(19.3=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAATTACGTTCTCCGGG
R:
CTGTAGCTGCAAAAATGGGATGT
Band lengths:
246-633
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]