BtaINT0121633 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039573 | RABL6
Description
Bos taurus RAB, member RAS oncogene family-like 6 (RABL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001076817]
Coordinates
chr11:106350980-106351697:-
Coord C1 exon
chr11:106351557-106351697
Coord A exon
chr11:106351086-106351556
Coord C2 exon
chr11:106350980-106351085
Length
471 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTCTGCTCTCCTGCGAACAGGCC
3' ss Score
8.89
Exon sequences
Seq C1 exon
GACCTTCAACTACATCCTGCGGGAGCTGCCCAAAGTGCCGACACACGTGCCCGTGTGCGTGCTGGGGAACTACCGCGACATGGGCGAGCACCGCGTCATCCTGCCCGACGACGTGCGCGACGTCCTCGACCACCTGGACAG
Seq A exon
GTGGGCCCACGGCTGCCCCCAGGCACGCCCGACCCCCCCACCGGGACGCTCCTGTCCCCCTGGATCGGCCTGCTGCACTGCCCCTGCCCGAGCCCTGGCCACCCCCCCCCAGCTGCAGGCCCCGGGCCCTCCTGGAGACTGACTCGGGCAGGGTCACGGCTGAGCACCCCCAGTGTGCGGCAGGGATGTCGGCCCGGTCCCTGGGCCAGCATGGGTGGGGTGCACGGTGAGGCCGTGCAGGGGCAGACGGCCCCAGCTGCCTGGTCTTGGCGTCCACCAGAGGGCGCCCTGCCGAGCAGAGCCACCTGAACCTCGTGTCTCCACCTGGGACGGTGGGCCTGTTACCCACTGGCCGACCCAGCGCCCGGGGGCACTGCCCCCAGGACGGCCTAGCCCGGGTTCATCCTCGGCCCAGTGCGCCCCGCTGCCCCGGCCGCCTCAGGCTCTCCGACTCTGCTCTCCTGCGAACAG
Seq C2 exon
GCCCCCGGGATCTTCTTACTTCCGCTACGCTGAGTCCTCCATGAAGAACAGCTTCGGCCTCAAGTACCTGCACAGGTTCTTCAACATCCCCTTCCTGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039573:ENSBTAT00000001237:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=PD(19.3=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAACTACATCCTGCGG
R:
CTGAAGCTGCAGGAAGGGGAT
Band lengths:
246-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development