DreINT0123798 @ danRer10
Intron Retention
Gene
ENSDARG00000077653 | rabl6b
Description
RAB, member RAS oncogene family-like 6b [Source:ZFIN;Acc:ZDB-GENE-081104-97]
Coordinates
chr5:26214154-26214731:+
Coord C1 exon
chr5:26214154-26214294
Coord A exon
chr5:26214295-26214625
Coord C2 exon
chr5:26214626-26214731
Length
331 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGA
5' ss Score
4.42
3' ss Seq
GATGTCTTCATGATTTGCAGGCC
3' ss Score
7.52
Exon sequences
Seq C1 exon
GACCTATAATTACATTCTTCGGGAGTTGCCTAAGGTGCCAACTCATGTGCCAGTGTGTGTGCTCGGAAATTACAGAGACATGGGAGAACACAGAGTCGTTTTGCCTGATGACATCCGTGACTTCATCACTGGTCTTAATAG
Seq A exon
GTCAGAACATTACTTTGAACAGAAATGTGTCAATTAACCATTTTAACTCTCTTAAATTTGCATTATTGTAATTGATTTATGACTTCATCAGTAATTAAATGTAATTAGTAATTCATATGTCACTTTATTCTCATTTAACCTGAATAAATGTCACATTATGGAAGGAATTAGACTGTTAATTCTGTTATCTTGTTAGCAGAAGATTGTTGGTGGCGTTTTATCACAAATAGGTTGAGATGAGTTATTGCCAAATTTAATGTAATTTGTTCATTCATGAGTTAATTATGTTGGGTTATTCTTTTGTAATGTTTGATGTCTTCATGATTTGCAG
Seq C2 exon
GCCTCTTGGCTCCTCCTATATCCATTATGCAGAATCTTCCATGAAGAACGGCTTTGGTTTGAAATATTTGCACAGATTTTTCAACATTCCATTCTTGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077653:ENSDART00000142753:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=PD(17.8=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATAATTACATTCTTCGGGAGT
R:
CTGAAGCTGCAAGAATGGAATGT
Band lengths:
246-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]