GgaINT0125755 @ galGal3
Intron Retention
Gene
ENSGALG00000008984 | C9orf86
Description
NA
Coordinates
chr17:988789-993585:-
Coord C1 exon
chr17:993474-993585
Coord A exon
chr17:988893-993473
Coord C2 exon
chr17:988789-988892
Length
4581 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTTGTTTTTCCTTTCTTTAGAGG
3' ss Score
9.28
Exon sequences
Seq C1 exon
AGACAGGCCTCCTGGCTCCTCATATTTTCGCTATGCTGAGTCTTCCATGAAGAACAGCTTTGGCCTCAAGTACCTGCATAAGTTCTTCAACATCCCCTTCTTGCAGCTGCAG
Seq A exon
GTAAAAGACGCTGCTTCCATGACGTGTGCGGGGCAGAGTTCGTGGGCATTTGACTTTATATGTGAAATTTTTTGTTATGGTTGGTGAAGGATCCTGAATAGATTTTTGTTTTCATAAGAGTGTAGTTAACAGAATTATATTAGTATATCGGTGCCTGTGACTTGAACTTGACTCTGGAGAAGGACTTGGGGGTCCTGGTGCATAAAGACCTGCAGTGTGCGCTCACAGCCCGGAAGGCCACCAGCGCCCTGGGCTGCACCCACAGAGGGCTGGCAGCGGGCAGGGAGGGGATTGTCCCTCTCTGCTCTGCCCTCGTGAGGCCCCATCTGCAGTACTGCGTCCAGGCCTGGGGCCCCCAGCACAGGAAAGACGTGGGGCTGTTGGAGCGGGTCCAGAGGAGGCCACGAGGACACTCAGAGGCTGCAGCACCTCTCCTGCAAAGACAGACCGAGGAGCTGGGGGTGTTCAGCCTGGAGAAGACAAGGCTGCGGGGAGACCTTCCAGAAGTTGAGGGGAGCTTATAAGCAGAAGGGGAACCAATTTTTAACATGTGCAGATGGTGACAGGGCTATGGGGAATGGCTTTTAATGAAAAGAGGGGAAATTTAGGTTAGATGTTAGGAAGAAATTCTTTACTCAGCTAGTGGTGAGGGACTGAAACAGGTTACCCAAAGAAGTTGTGAGGGCCCCATTGCTGGAGGTGCCCAAGGCTGTGACTGCATGGGGCTCTGGGCAGCTTGACCTGGTGTGGGGCAGTCAGCCCATGGAAGGGGGTTGGAGCTAGGTGATCTTTGGGGCCCCTTTCAATCTAAACCATTATATGATTCTTTGCTTGTAAAAGGATTCATGTTTGCCATGTTTGAAAGTGCTTACCTGTGTAGAAAGGCTCCAAGGTGATGAATTTCTTGCTGGCAAGAAAACAGCAAGCAGTGTTATAATAACCAAGTCAGAAATATTGCACGTATTTTAAACATTCTATTTAAATTCTGTTTTGTCAATCAGTTAAAACTCAGATGAGAAAATAGTATGGACTGAATAGTTCAGAGACAACAAATTACTGGAAATCCTTGTCCTAATCTGAATGGTATCTGATCTGCTTGGATCCTATAGCAGCAGACCCAAGTCTCTGATTTCTGTCATAATGAACCATCTTGGCTTGACTGAGAGAAAAGGTAAGGGCTGAATGGGCATGGCAGGGTGAAATCCTCAGCTGTGGTCCTTCAGAAGAGGACCTTAAGACGTCATCCATCATACAGGGGTCCTTGATGCCTCTAGGGGTGCAAATGATGTTGCATCGGTGCTTTTTTTTTTTTTTTTTAATGAAAAAATTCAGACAGTTGGTCTTGATTTTCTTTTGCTAGTAAGTGAAATATCTGTGTGCTTTTTTACACACGTAATCCAAACTGAAATGCTAATTCAGGGTAAGCTTGGATGTGTTAGTGAATGTTACCACAGCCCAAGTCAGCACAGCAGATGCATTAGAAAGAATCAGGATAAGAAAACTGAATATATGAAAACCTAGTAAAACAAGTCGTCTTTTTGAGGAGGAAGCTATTTTTACAACTTGCAGCTCAGTTGAGAAGACTGAAGCCTTCCAGCATGATGTTGGTGAGATGTTTGCTTCTATGGCTTTGGTTCCTGTGATAAAATGGTGTCTTTTGGAAATCAGGCAGAATAATTTGTTTCCAGGTTGTTTTGTTTGTTTGTTTGTTTTTGTAGATATCCCCTCTTCTCAAATAGATGTTGATGAGAAACTGAGACATCAGCATGGGCTTCCAGACAGATTTGTCTGAAAGCTGCTAGTATGATGCTCTTAATGGTCACTACATGCAGTGGTTTTCCTAAATACGGATGTAAGCAGGAAGGGCTTGCATGGGAAGAGCTTTAGGGTGAGAGTCTTAGGGCATGTTTCATTTAAATGTGCTGTGTATCAATAAGCGTGATCTATAAGTCTGAGACTGAAAGGACACTTGAACAAGGTAGTTGGCCCCAAAGCCAGGGAACTTCTTGAACAGATCTCAGACTTCAGGGAAATAGAAGAAATAAACCTGGTATGGCCTTTCAGCAGTTCAGAGATGTCAGGGACAGCTGCCCAGGATAAGGTGAGGGGATGGGGTGACCAGTTCCCCATTGCTCTCCTGTGCAGTGGGTGTGGGGTTGCACTGGGGATCATCCAGAACACAAGGTGCAGGTGCTGTGTGTGGGTTGAGCTCACTTACTGGACTGTCAGATCCTGTGGTTTGGTTTGGTTTTAGTTCAGAGAGACTTGGCAGCTAGAGGACTGGAAAGCAGTACTGCTCCTGGTACTTGGGTGCAAAGGAGGGTTAAAGAGGGGTCCTGCCATGCACTAATGCACGCAGGATTTCATTGGCCTCAGTTGCCTTTTGAGGTTTCTGTGCTGCCTGCTTGCTCTCCCGCAGCTCCCTGAGGGCAGAGGAGCTGCTGGGCTGCACGTGTGACTCCACTGTGTCCTTCGTGGAGCCGGTGTTCAGCGCCCTGCTTTCAGGTTGCGCATCTCTGTGTTCAGCTTCCCCATGCATCTTTCATAAAGGAAGTGGCGGGTGAAATCCATACCCCTGGTACAGAGCAAGCTCCCCCTGGTAGCCTGGCCTCTTCAATTATTTATCAGTTCCTTTGCAGGGGAAGGAGCCTCATATCTGAGGACGTGGTTTAGCCCTGGGTACAGCCAGTGGCCTGCATGGTGTGCTAATGGGATCAGGTCAGCCGGGCTTTTGGAGCACTGCAGAATTCTGCAGGCAGCTGAAATTGCCTTCTCCCAGAAAGCACTTGAAAGTGGCATTCAGCCAAAGCCCCGGTCTGCAGCACATGCTTTATTCCCTTCTTTTGGGTCATTGCTAAAAATAAGCTGCTGCTTTAATATTTTAATGCCAGCACGGTAAAATAGAATTTATTTTTATGTAGTTAGAAGTCCACTATTAGTAGTGAGTTTCTCTTGATTAAATCCAAGTTCTGAGTTTACTGCAATCTAGAAAAATAGAAATAAATAAGACCTCACATGCACATCTTATTGCTGAAGTACAAGGAAAGGCAAACCTCTTGTTTAATAAAAGCTATTATCAAAGTGCCTAAGGTAAGCATTGGAGAGCAGTGTCCCCTTTGCCTCTGTCTATTCAGATAATTTGATCAGCATTTCCTTCACTCATTTAGGAAAAAAAAGAGGACCAAGAAGCAGGAATCTTTCCTTTCTGTGTGATTTTTTTTTTTTTGTGCTTGCAGTCTATGAATAATAAAAAAGGATGAAATTGTTACTTCTGAAATGTTGGATGCAGGCACCATAGAACAAGCATTTAAAGTCACTTAGTACAGATCAGTGCTTCTGTTTAGTGCAGCAAGTTTAAATGTGTAGCATGTTTTGCTGAAGTTTCCTTATATAACACAATGAAGGGAATTCAAGTTAACTAATGGCTTCATAATTCTTTGTATACATTTTAATTGAGTTCACATTTCCATCTGCATAGTGCCTATGGATATGAAGATTAAAAAGTATCTAGTACAGGAAAAATGGATTAACACAATAACAAAGCATAAAAATTAAGAATGTCAATAACTGCTAAGCAGTGAATTAAATGATTGTAGAAATGTTGAGCAAGGCCACGTCTTTCAGCAGGTTAACATGTTTTGCAGTTATCGGTCCATATGAATCACCTGGCCGGGAGATGCTGGAGCTGTTGCTGTTGGAGGGATCCCCAGAGTGGTGCAGCTGCTGGTGCTGCTGCCTTGCAGCTCTCTGGGCAGCTGCTGCAGGCCAGCCCTCCAGCTGGGAGTGCAGGCACTGGCTCAGCATAACGCGTGTGGTTATTGATCTGTTCACAGTGCCTTTCAGGCAATCGGGAGGGTTGTGCCAGGGCCTTTTGCAGCTGCTTTAGAGTCCTTTAAGATGTCACTTCCCTTCAGCTGAGGCTTCTGCTTGTGATCTTGGGAATGTGGAAGGAAGGACCGAATTAAAATAACCCAACCCATTTTATGTCAGTGAAGTGTACTTTATTTCAGTTTCACATGGACTGCAGTGTCTGTCTCTCACCTGTGAGGCAGCAACCGAAGGCAGCGGGGCAGTGACTTCTAAAATTCCTCTTTGCTGGCAGGCTGTGATCCCTCATCTGTCCCAGCAGTCGAAGAAAAGTTATTGTGAGGTTTTGCACCAGTTGAGTCCTACTCACAGGAGGGCTTTTTATTGCAAAGAAAAAACAAAAAGGTCAGAATGAATGGGTTGCACAACTGCTTTCCACAGAAGTTGATACTGCTCTCCAAATGCAACCAGTGGTCCTATTTCTGGAAATCACACATTATTGGTTGATGATCTGGTCCTGTATGGCTCTCAGAACAGATTACTTTCATACAACCAGACTGTTTGGATCAGTGTGCTTTTTTGCTACCACTTCTGCTTCCCTGCCGCCCTGCAGATGTATTTAAACTGAACACCATGAGATGGACCAAAGCTCCTGTTTAATTAATTGCTGTGGGTAGAGTGGTGACACCAGATCTTGGTGCACCCTGAGAGTGCACAGAGATCTGTTACAGTGACCCTTCCTGCTCAGACCCGGCTTGTTTTTCCTTTCTTTAG
Seq C2 exon
AGGGAGACATTGCTACGGCAGCTGGAGACGAATCAGCTGGATATTGATGCGACTTTGGAGGAACTGTCAGTGCAGCAAGAGACAGAAGATCAAAACTACGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]