HsaINT0025595 @ hg19
Intron Retention
Gene
ENSG00000196642 | C9orf86
Description
chromosome 9 open reading frame 86 [Source:HGNC Symbol;Acc:24703]
Coordinates
chr9:139726717-139730297:+
Coord C1 exon
chr9:139726717-139726822
Coord A exon
chr9:139726823-139730193
Coord C2 exon
chr9:139730194-139730297
Length
3371 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGCGTGCTCCCTTTCTGCAGAGG
3' ss Score
10.28
Exon sequences
Seq C1 exon
ACCTCCAGGTTCCTCCTACTTCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTAAAGTACCTTCATAAGTTCTTCAATATCCCATTTTTGCAGCTTCAG
Seq A exon
GTAAGCACTCACCACGTGGGGTGGAGTGGCTGCTGGTCTCTCACCTCCTTCCAGGTGTCTCCTGTGTAGCAACGGGTCTCCCTCCTAACCCCTGAGAAAGCTGTGGACCTGCTCGGAGATTGGCTGCTGGCAAGGGCCCAGCGTTCTACTGCACCTGCCTGCTCTGGGTGGCAGAGGGTACAGGGTCCTGAGGGCTAGACCCAGTCCCAGGAGCCCCTCCACCTCTGCGGGGACCCCTTGCTCAGTTTCCCCCAGTGTTTTTGGTTGTTTTTGTTTGTTGAGATAAGGTCTTGCTGTGTGGCCCAGGCTGGAGTGCAGTGGCGCAATCATGGCTCACTGCGGCCTCAAACTCCGGGGCTCAGGCAATCCTCCCACCTGTCTCCCAAAGTGCTGGGATGCCAGGCGTGAGTCACCGAGGTACTCGCTGTTCACATCTCACATTTCCCTGGTGCTTGTGTCAAAACCAAGGAACCAACTTTGGCCTACGGACTAAACTCACTTTCCTTTGTAGAAACAAGGGCCAGGCCAGCTGTGGCTGCAAAGTAGCCCAGCAAATGATGAGGCTTGAACCTCCTCGCCCTGGGCTGCCCTGATTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCTGACTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCACCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGATCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGGACCTGAACCTCCTTGCCTGGGCTGCCCCGCCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGTACCTCCTCGCCCTGGGCTGCCCCGCCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGACTGGGTCTGGGGGACCTGAATCTCCTCACCCTGGGCTGCCCCAGCTGGGTCTGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCAGCTGGGTCTGGGGGACCTGAACCTCCTCGCCCTGGGCTGCCCCGACTGGGTCTGGGGGACCTGGGGCCCAGCTGCAGCTGCAGCAGCCTTGGTCTTTCTCCAGAAGGATGTCAGGCTTGCCCAGGAAAGGGGCTGTGCTGTCGTCCTGGTGTCAGAAGAAGTGAGGATGCCTGCAGGCTGGGACTGCTGCTGGGGACGTTTGGGTTGGAAGGAAGGCGGCAGTCAGACTTGTCCTGTGCCGGCACTGCTGGGGAGGCCCCTCCTTCCTGCAGAGCCGTCCCCTCATCACTGGGTTGATTACTCCTTAGAGAGCTCCCCACTGCTCAGCTGCTCCATTCCCTAATGGTTTGCCCTCCAAACCCTTCCAAAGCCTCCCAGGGAGAGAACGGGACCCTGGACAGAGTCTTGAGCTGGAAGCGTAGGGCTGAGCTGTGTGTGACTATCCTTTTGCTATGGATGTGTTCAAGCAGATCTGATGTCCTCGCCTGTCTCAGCAGCGGGACCCCTGTTTCCTCTTTGTCTTGCCCCTGGATTGCCTGGAAGCAAATTTCAGGCCTTCTTTATGTCACCTAAAAATATTTCAAACACATCTCTAAAAAAATCAGTTGTTTTTTTAACCTGACCGTAGTACCTAATGTAATACCGCATGTTAAACTCACAGAAGGTTTTTCTTGGAGAAATAAGCCACAATAACAAATTGAAAAAATAAAATTCCCAAAGAGTTCTTCCAGTCGTCAGATATTTGGTCAGTATTCAGAGTAGGATCCAGAGTTCACACATTACATTTGGTTGACAAGTCTGTAGATTTCTCTTTGTAAATCACATTTTTTTGTTGTTGTTATAGCCTGGGGACCTTAATGACTTTAATACACTCTTTTTTTTGGAGACGGAGTCTCACTCTGTCCAGGCTGGAGTACGGTGGTGCAATCTTGCCTCACTGTAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTAAGCCTCCCAAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGGGACGGGGTTTTGCCATATTGGCCAGGACGGTCTCGATCTCTTGACCTCGTGATCTGCCCGCCTTGGCCCCCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCAGCCTCACATTTTTATTTTAAAAACCTCTCCAGGCTGGGCGCAGTGGCTCACGCCTATAATCCCAGCTGTTAGGGAGGCAGAGGTGGGAGGACAGCTCGAGCCCAGGAGTTCCAGATCTTCTGCCTGGGCAATATAATATAGCATGACCCTGTTCTAAAAAAAAAAAAAAAAAAAAAATCTCTGAAAAAGATGATTCAAAAAAAAAAAAAGGAGAGGCCAGGCAAGTAGCTCAGGCCTGTAATTTCAGCAGAGGCCAAGCTGGGAGGATCACTTGAGTCCAGGAATTAGAGACCAGTCTGGGCAACATAGCGAGACCCCATCTCTATTTAAAAAAAGAGAAGGGGCCGGGCACGGTGGCTCCCGACTGTCATCCTCGCACTTTGGATGCTGAGGCAGCTGGATCACCTGAGGTCAGGAGTTCGTGAGGCTCCGGCGTTTGTATTTCATTTGAATCTAAAGTGAGCAGCCACAGGGACCCGCAGCTCATCAGACCAGCCTGGGGTTCCAGGCCAGGAGGGCAGTGGTTTGCTCCAGAGCCAGCTGCTTGTGGGTGTGGGACGGTGGCGACGCGTGCACCGGGGATGTGTCCTGCCACCAGAGGAGGTGTGCGTGGCGGGGAGCAGAGGGGCTTTGTTTCCCAGGTGAAGGTGCGGCTTCTTCACTCTTAGAGGTGCGTGTGTGGGTGGGGGTGCTTGCTGTTGAGGTTTATGCCTGTGACTGACAGCTGTCCCCCAAGCCATGCTGGCAGTGTGTAGGTGTCGTGCCGGCCACCGCAGAGGAATCCTCTGGGCTTCTGTGGTTCAAGTGGGGCCCAGCGCAGAGCTCCATGAGTTGCTGAGCAGCCAGCCCTGCAGCATCTCCTGGTTTTGGCAGCAGGAGGCGTCCCCTGTGCATTCAGGGGCTGTGGGGCTGGGGCACTCGCAGCAGGAAGGAGCCCTGCTCAGGCCTGCGTGCTCCCTTTCTGCAG
Seq C2 exon
AGGGAGACGCTGTTGCGGCAGCTGGAGACGAACCAGCTGGACATGGACGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGGACCAGAACTACGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196642-C9orf86:NM_024718:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.681
Domain overlap (PFAM):
C1:
PF0465211=DUF605=FE(10.7=100)
A:
NA
C2:
PF0465211=DUF605=FE(10.4=100)
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)