GgaINT1001336 @ galGal4
Intron Retention
Description
NA
Coordinates
chr17:604979-609775:-
Coord C1 exon
chr17:609664-609775
Coord A exon
chr17:605083-609663
Coord C2 exon
chr17:604979-605082
Length
4581 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTGTTTTTCCTTTCTTTAGAGG
3' ss Score
9.28
Exon sequences
Seq C1 exon
AGACAGGCCTCCTGGCTCCTCATATTTTCGCTATGCTGAGTCTTCCATGAAGAACAGCTTTGGCCTCAAGTACCTGCATAAGTTCTTCAACATCCCCTTCTTGCAGCTGCAG
Seq A exon
GTAAGAGACGCTGCTTCCATGACGTGTGCGGGGCAGAGTTCGTGGGCATTTGACTTTATATGTGAAATTTTTTGTTATGGTTGGTGAAGGATCCTGAATAGATTTTTGTTTTCATAAGAGTGTAGTTAACAGAATTATATTAGTATATCGGTGCCTGTGACTTGAACTTGACTCTGGAGAAGGACTTGGGGGTCCTGGTGCATAAAGACCTGCAGTGTGCGCTCACAGCCCGGAAGGCCACCAGCGCCCTGGGCTGCACCCACAGAGGGCTGGCAGCGGGCAGGGAGGGGATTGTCCCTCTCTGCTCTGCCCTCGTGAGGCCCCATCTGCAGTACTGCGTCCAGGCCTGGGGCCCCCAGCACAGGAAAGACGTGGGGCTGTTGGAGCGGGTCCAGAGGAGGCCACGAGGACACTCAGAGGCTGCAGCACCTCTCCTGCAAAGACAGACCGAGGAGCTGGGGGTGTTCAGCCTGGAGAAGACAAGGCTGCGGGGAGACCTTCCAGAAGTTGAGGGGAGCTTATAAGCAGAAGGGGAACCAATTTTTAACATGTGCAGATGGTGACAGGGCTATGGGGAATGGCTTTTAATGAAAAGAGGGGAAATTTAGGTTAGATGTTAGGAAGAAATTCTTTACTCAGCTAGTGGTGAGGGACTGAAACAGGTTACCCAAAGAAGTTGTGAGGGCCCCATTGCTGGAGGTGCCCAAGGCTGTGACTGCATGGGGCTCTGGGCAGCTTGACCTGGTGTGGGGCAGTCAGCCCATGGAAGGGGGTTGGAGCTAGGTGATCTTTGGGGCCCCTTTCAATCTAAACCATTATATGATTCTTTGCTTGTAAAAGGATTCATGTTTGCCATGTTTGAAAGTGCTTACCTGTGTAGAAAGGCTCCAAGGTGATGAATTTCTTGCTGGCAAGAAAACAGCAAGCAGTGTTATAATAACCAAGTCAGAAATATTGCACGTATTTTAAACATTCTATTTAAATTCTGTTTTGTCAATCAGTTAAAACTCAGATGAGAAAATAGTATGGACTGAATAGTTCAGAGACAACAAATTACTGGAAATCCTTGTCCTAATCTGAATGGTATCTGATCTGCTTGGATCCTATAGCAGCAGACCCAAGTCTCTGATTTCTGTCATAATGAACCATCTTGGCTTGACTGAGAGAAAAGGTAAGGGCTGAATGGGCATGGCAGGGTGAAATCCTCAGCTGTGGTCCTTCAGAAGAGGACCTTAAGACGTCATCCATCATACAGGGGTCCTTGATGCCTCTAGGGGTGCAAATGATGTTGCATCGGTGCTTTTTTTTTTTTTTTTTAATGAAAAAATTCAGACAGTTGGTCTTGATTTTCTTTTGCTAGTAAGTGAAATATCTGTGTGCTTTTTTACACACGTAATCCAAACTGAAATGCTAATTCAGGGTAAGCTTGGATGTGTTAGTGAATGTTACCACAGCCCAAGTCAGCACAGCAGATGCATTAGAAAGAATCAGGATAAGAAAACTGAATATATGAAAACCTAGTAAAACAAGTCGTCTTTTTGAGGAGGAAGCTATTTTTACAACTTGCAGCTCAGTTGAGAAGACTGAAGCCTTCCAGCATGATGTTGGTGAGATGTTTGCTTCTATGGCTTTGGTTCCTGTGATAAAATGGTGTCTTTTGGAAATCAGGCAGAATAATTTGTTTCCAGGTTGTTTTGTTTGTTTGTTTGTTTTTGTAGATATCCCCTCTTCTCAAATAGATGTTGATGAGAAACTGAGACATCAGCATGGGCTTCCAGACAGATTTGTCTGAAAGCTGCTAGTATGATGCTCTTAATGGTCACTACATGCAGTGGTTTTCCTAAATACGGATGTAAGCAGGAAGGGCTTGCATGGGAAGAGCTTTAGGGTGAGAGTCTTAGGGCATGTTTCATTTAAATGTGCTGTGTATCAATAAGCGTGATCTATAAGTCTGAGACTGAAAGGACACTTGAACAAGGTAGTTGGCCCCAAAGCCAGGGAACTTCTTGAACAGATCTCAGACTTCAGGGAAATAGAAGAAATAAACCTGGTATGGCCTTTCAGCAGTTCAGAGATGTCAGGGACAGCTGCCCAGGATAAGGTGAGGGGATGGGGTGACCAGTTCCCCATTGCTCTCCTGTGCAGTGGGTGTGGGGTTGCACTGGGGATCATCCAGAACACAAGGTGCAGGTGCTGTGTGTGGGTTGAGCTCACTTACTGGACTGTCAGATCCTGTGGTTTGGTTTGGTTTTAGTTCAGAGAGACTTGGCAGCTAGAGGACTGGAAAGCAGTACTGCTCCTGGTACTTGGGTGCAAAGGAGGGTTAAAGAGGGGTCCTGCCATGCACTAATGCACGCAGGATTTCATTGGCCTCAGTTGCCTTTTGAGGTTTCTGTGCTGCCTGCTTGCTCTCCCGCAGCTCCCTGAGGGCAGAGGAGCTGCTGGGCTGCACGTGTGACTCCACTGTGTCCTTCGTGGAGCCGGTGTTCAGCGCCCTGCTTTCAGGTTGCGCATCTCTGTGTTCAGCTTCCCCATGCATCTTTCATAAAGGAAGTGGCGGGTGAAATCCATACCCCTGGTACAGAGCAAGCTCCCCCTGGTAGCCTGGCCTCTTCAATTATTTATCAGTTCCTTTGCAGGGGAAGGAGCCTCATATCTGAGGACGTGGTTTAGCCCTGGGTACAGCCAGTGGCCTGCATGGTGTGCTAATGGGATCAGGTCAGCCGGGCTTTTGGAGCACTGCAGAATTCTGCAGGCAGCTGAAATTGCCTTCTCCCAGAAAGCACTTGAAAGTGGCATTCAGCCAAAGCCCCGGTCTGCAGCACATGCTTTATTCCCTTCTTTTGGGTCATTGCTAAAAATAAGCTGCTGCTTTAATATTTTAATGCCAGCACGGTAAAATAGAATTTATTTTTATGTAGTTAGAAGTCCACTATTAGTAGTGAGTTTCTCTTGATTAAATCCAAGTTCTGAGTTTACTGCAATCTAGAAAAATAGAAATAAATAAGACCTCACATGCACATCTTATTGCTGAAGTACAAGGAAAGGCAAACCTCTTGTTTAATAAAAGCTATTATCAAAGTGCCTAAGGTAAGCATTGGAGAGCAGTGTCCCCTTTGCCTCTGTCTATTCAGATAATTTGATCAGCATTTCCTTCACTCATTTAGGAAAAAAAAGAGGACCAAGAAGCAGGAATCTTTCCTTTCTGTGTGATTTTTTTTTTTTTGTGCTTGCAGTCTATGAATAATAAAAAAGGATGAAATTGTTACTTCTGAAATGTTGGATGCAGGCACCATAGAACAAGCATTTAAAGTCACTTAGTACAGATCAGTGCTTCTGTTTAGTGCAGCAAGTTTAAATGTGTAGCATGTTTTGCTGAAGTTTCCTTATATAACACAATGAAGGGAATTCAAGTTAACTAATGGCTTCATAATTCTTTGTATACATTTTAATTGAGTTCACATTTCCATCTGCATAGTGCCTATGGATATGAAGATTAAAAAGTATCTAGTACAGGAAAAATGGATTAACACAATAACAAAGCATAAAAATTAAGAATGTCAATAACTGCTAAGCAGTGAATTAAATGATTGTAGAAATGTTGAGCAAGGCCACGTCTTTCAGCAGGTTAACATGTTTTGCAGTTATCGGTCCATATGAATCACCTGGCCGGGAGATGCTGGAGCTGTTGCTGTTGGAGGGATCCCCAGAGTGGTGCAGCTGCTGGTGCTGCTGCCTTGCAGCTCTCTGGGCAGCTGCTGCAGGCCAGCCCTCCAGCTGGGAGTGCAGGCACTGGCTCAGCATAACGCGTGTGGTTATTGATCTGTTCACAGTGCCTTTCAGGCAATCGGGAGGGTTGTGCCAGGGCCTTTTGCAGCTGCTTTAGAGTCCTTTAAGATGTCACTTCCCTTCAGCTGAGGCTTCTGCTTGTGATCTTGGGAATGTGGAAGGAAGGACCGAATTAAAATAACCCAACCCATTTTATGTCAGTGAAGTGTACTTTATTTCAGTTTCACATGGACTGCAGTGTCTGTCTCTCACCTGTGAGGCAGCAACCGAAGGCAGCGGGGCAGTGACTTCTAAAATTCCTCTTTGCTGGCAGGCTGTGATCCCTCATCTGTCCCAGCAGTCGAAGAAAAGTTATTGTGAGGTTTTGCACCAGTTGAGTCCTACTCACAGGAGGGCTTTTTATTGCAAAGAAAAAACAAAAAGGTCAGAATGAATGGGTTGCACAACTGCTTTCCACAGAAGTTGATACTGCTCTCCAAATGCAACCAGTGGTCCTATTTCTGGAAATCACACATTATTGGTTGATGATCTGGTCCTGTATGGCTCTCAGAACAGATTACTTTCATACAACCAGACTGTTTGGATCAGTGTGCTTTTTTGCTACCACTTCTGCTTCCCTGCCGCCCTGCAGATGTATTTAAACTGAACACCATGAGATGGACCAAAGCTCCTGTTTAATTAATTGCTGTGGGTAGAGTGGTGACACCAGATCTTGGTGCACCCTGAGAGTGCACAGAGATCTGTTACAGTGACCCTTCCTGCTCAGACCCGGCTTGTTTTTCCTTTCTTTAG
Seq C2 exon
AGGGAGACATTGCTACGGCAGCTGGAGACGAATCAGCTGGATATTGATGCGACTTTGGAGGAACTGTCAGTGCAGCAAGAGACAGAAGATCAAAACTACGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF0465211=DUF605=FE(10.4=100)
A:
NA
C2:
PF0465211=DUF605=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]