RnoINT0123494 @ rn6
Intron Retention
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2812327-2816572:-
Coord C1 exon
chr3:2816467-2816572
Coord A exon
chr3:2812431-2816466
Coord C2 exon
chr3:2812327-2812430
Length
4036 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TATGTCCGCTTCCTCTGCAGAGG
3' ss Score
10.51
Exon sequences
Seq C1 exon
ACCTCCAGGTTCCTCCTATTTCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTTGGCCTAAAGTATCTGCATAAGTTCTTCAACATCCCATTTTTGCAGCTACAG
Seq A exon
GTAAGTGTGTACCAGGTAGGGCAAACAAGTGAGAAGCCATCACTTCTGTGACTCTCACAAGAATTGCCCTTCTTCCTAAACCTGATACCACCCTTGGCAACCTTCTTGGGAACCGGCTAACACATGTATGTAGTGGGTGCTACCACATGTATGTAGTGGGCTGGAGGTGGCACAGGTAGCCTCGGAGCAGTTGGCCAAGAGTCAGGTAACATGTCCTGCTCTCTAAGGGCATTTGGAAGTCAGGACAGCATGGCGTCTCTGAAGCGCTGACTGAAGTGCACACCCCCTTTCCCAGATAAACAGATAGCTGTGGAGGAGGTCCCAGTCACACTGAGGTGTCTTTCAACAAGAGGCAGGTTCCAGGATATGCAGCTTCTGTGACTACATTCAAATGCTGGGCTGGCTGTACTCTGTGAACCATGCCCTCTGCCATCTATCTCATGAAGAAAAGAAAACCTGTAGCCTTGCCAGAAGCATCTAGCCGTCCTGATGCAGTGGAGGCAAGTAGGGTGCCTGTCAGGGTAAAGAGCTGTGCCTACCCTGCTTTTCCCCTAGTGCTCCTGTGGAACCTTCTGGATGTACAGAAGTGGCCAAGGCTGTCCGTGGAGACACAAGCCTGTAATCCAGCATTCAGAAAGCTGAGTCAGGAAGATCACGTCAGGTTCAGTAAGAGGGAGACCCATCTAAAAAACTTAAAAGGGTAATTCCAGTACTTAGGAAATAGAAGCAAGAGGATCAGAGGTTCAGGGTCATCCTTTGCAATGTCACAGGTTCAGGACCAGCCTGGGTTCCCTCAAGAACAGAAAATGTTGCAGAGGTAGTAAAACATGACCATATCCCCACCCAGTCCCCATTATCTGCAGTTTGTTTCTACATTTGTCTAAACCAAGGAACCAGTATCGATATGTGTGTAAACTAAAGGCTCCATCTAGTCCAGTTTCTTCAGAATCCTGCCCTGCTAAGCTCTGGTCAGTGTCTCTGCTCTCGATGTGTGTTGTAGCTTCTCAGAGCTAGTAGAGCCACAGACTATGTAGACGGTGGAACAAGGCTCTCGATCCTAAGCGTAATAACAAGACCAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCTCATGGTGGCTCACAACCACCTGCAATGGGATCAGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTATTCATATACAATAAATAAATAAAAAACAAAACAAAAAAAAGGACCAATCCCTGAGCCACATCCCTTTTGGAACAAACGGCTTGGTACAAGGTCTCTGGTGAACAAGAAAAGGCTAAACAGGCTTAGCTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTTATTTATATGAGTACACTGTAGCTATCTCCAAACACCTCAAGAACAGGGCATCAGATCTCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTAACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTTAGCTGTCTTTCTAGACCTGTAGCCTCCCCTGTATCTAGTAGCCTTTCATACTTTATGCAAGACATCCATCTCACTTAGAAAGGTAAAGCCTTCCTTTTCTTCATCTCTTCTTTTGAGGAACATGAGGTTCCTGCAGATGGGGGCTATGATAAGGAACCTCTACCAGAGGCCTTTCCTGTTGAGTCACCAAACTTTTTCTTGGGAGACATCACGCTGGTCTACTAAATCTAGGTAGGGATCCCATGACAGACGCAAGTATGATTACCGCCACAGTCTAACCTGGTGACCCAATGAGTTTCATTGGGGTTACTTACAGGAGCAGAGATGACTCAAAGATAACTGCATCACCAGAGCCCGCCCAGCATGGGTGACAGCTTACACAAGCTGAAAACCTGGAGTTCATTGCATAGCCTTCCCATGCAACTGGTCTGGTCTGGATCTTTTTTGCAGCCTTTCTCCTCTGAGAGTCAGCCTTTATTGCTAACTGGGACGGGGGGCCTAGTGAATCTGGTCAATTTCAGGGACTTCCTGAAGCTATATTCAGTTGTTTGCCTTCTTATTTAAAGAACTCTGCAGCGTGGATGTTTTAATCTAGGAGGAAACTGTTAACCAAACTCCTCACATTGCTCTATTCTATGAAAGCTTTACCACTGACTTAGACCAAGGGATGCAAAGTAGTGCCAGAATAGTCATTTGTGCTAAAAGCCTGAGCTGAGATCCAAACCAGTACAGCTTTCCTCCATGGTTCCTTGCAGGGAATGATGGCCACTGTCCGCTGTCAGGGTGCTGGGTACCTGGAAGTAACCATGAATTGAAACATTCCATCTTGGAGGGGCTGGCTGCTCTTCTAGAGAATGGCAGTTCAATACACAGCACCCACATGGTGGCTCACAACTGTCAATTGTCAAGGGATCTGAAATGCCCTTCTGGCTCTGTGAGCGAGCACCAGACATGTACATGGTACACAGACACAGCATGCAGACAAAACATTTTTTTATTAGATATATTTCTTTATTTACATTTCAAATGTTATTTCCTTTTCCAGTTTGCTGTTCATAAGTCCCCTATCTGCTCCGCCTCCCCGATACAGGTGCCCCTCCCATCCACCCCAGACAAAACATTTTAAAAGAAAAAAAACATTACTTTTTGGATTTGGGAATGTAACTGTTAGATTACTTGCCTACTATGCATGACCATGTGTGGCACAGGTCTATAATCGCAACACTGGGGAGGTGGAGGCAAGGAGGAAAAGAAATTCAACATCATCCTTAGCCATATAGCAAGTTCAAGGCTAGACAACCATGAGGCTGGAGAGATGATTCAATAGTACAGCCTGCCGCCCTTCCAGGGGGTCGGAGTTTAGTTCCCAGCATCCACATTAGGTAGCTCAGAAATGTGTATAGCTTCAAGAGAGCCAGTACACATTGTCATTTAAACATGCGGCTTCACTTAGACATATGTGGGCATGAAAATATCAGAACGTCTTGGGTATGGTGATGCACGCCTCTGATCCCAGCACTCAGGAGGCAGAAGTTAGTGGATCTCTGAGTTGGAGGCCAGCCAGGGCTACACAGAGAAAAGCACCTACAATTATTTAAATCACCAGTTACTGGTCAGTATTCAGGGTAAGATCTAAATAGACTATACAATGTATGTGATGTGGCCATCTGGGCTTTTCTTAGTGTAGCACATGTTCAGTTTTAAAGTAGAGCCCTCGTGAGTCTGAGGCATGCCTGCTTGTTAGTCCTGAGTGTCGACTGCATCATTCTTGTGTATTTCTTTGTACTTTTTTTTTTTCCGGAGTTGGGGACCAAACCCAGGGCCTTGCTCGCTAGGCAAGCGCTCTACCGCTGAGCTAAATCCCCAACCCCATTTTTTTTTTTTTTTTTTTTTTGTCTGTGTGTACTTTTCAAAGTATAAACAAACCCCAGGTCTCTTGGTCTGCAGTTAACTCCCACTTTTTTCATTTGGTTTGTTTGCTCTGTGCTGAAAGGACCCCAGTGTGAGCCTGGGACAAGCCAGGCAGTGCCTCTTGTCCACCAGGGCCTCTCTAGGAACACAGTCCTGTTCTGTGCTCCTTACACAGCCTAGAAGCCGCTGTATTTTAAGATTAAGTTTTAATGCAATAAGCCATGTTGACTGACAGCCATGGCAGCTGGATCAGCTTTGTTCATCAAACTAGAAATGCATGTTTTACCCAGTTAGTACCTGGTAGAGTTTCTCACCTAAAGTTGCCCCTGAAGCTCCACAGACACCGTAAGCACCTGTTTCCATGCTTCTGTGGCCTGATACGTATTGTAGCCAACAAAAGTGCTAGTGACCAAAGATTCGGAACAGCAGGCGGCACTTCCTGGTGTAGCTCCACGTGGCTTATATCCTCCAAGTCATGAAGCTGACCTTGCAGGCAGCCAGACCTCGGGTCTCTGACAGAGACAGGCTGTAGAATGGGGAAGAGGCATATTCAGCTATGTCCGCTTCCTCTGCAG
Seq C2 exon
AGGGAGACATTGCTGAGGCAGCTGGAGACAAACCAACTAGACATCGATGCAACACTAGAGGAGCTGTCCGTGCAGCAGGAGACCGAGGACCAGAACTACAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795:ENSRNOT00000065410:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]