MmuINT0022525 @ mm9
Intron Retention
Gene
ENSMUSG00000015087 | B230208H17Rik
Description
RIKEN cDNA B230208H17 gene [Source:MGI Symbol;Acc:MGI:2442633]
Coordinates
chr2:25444129-25447923:-
Coord C1 exon
chr2:25447818-25447923
Coord A exon
chr2:25444233-25447817
Coord C2 exon
chr2:25444129-25444232
Length
3585 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTGTCTACTTCCTCTACAGAGG
3' ss Score
8.89
Exon sequences
Seq C1 exon
ACCTCCAGGTTCCTCCTATTTCCGCTATGCTGAATCTTCCATGAAGAACAGCTTTGGTCTAAAGTACCTGCATAAGTTCTTCAACATCCCATTTTTGCAACTACAG
Seq A exon
GTAAGTGCGTACTAGGTAGGGAAAACAAAAGGGTAACCATCATTTTTGTGACTCTGCACAAGAAGTGCCCTGCTTCCTAAGCCTGATAACACCCTTGGGCACCTTCTTGGAAGCTGGCTACTGATGTATGTAATGAGCTGGACATGGCACACACAGTACTCATAGTGGCGGCCAAGAGTCTGGTAACATGTCCTGCTCTCTAAGGGCATTGGAAGTCAGTACAGCCTGTAGAGGGAGCCCTTGTCCCCTGTGGGGCACCAATTGAAGTGCATACCTCATTTCCCAGATAAACAGATAGCTATGGAGGAAGTCCCAGTCACAACAAGTCTTTCAACAAGAGGCAGGTTCCAGGGTATGCAGTTTCTGTGACTACATTCACGTGCTGGCTGTGCTCTGGGAACCATGGCCCTCTGGCCAGCTCATGAAAAAAGGAAAACCTGTACCCTTGCTACAAGCATCTAGCCTTCCTGATACAGCGGAGGCAAGTAGAGTGGCCTTCAGGGTGAAGAGCTGCACCTATCCTGCTTTTTAATTAGTGCTCCTCTTGGAACCTTCTAGATGTATAGAAGTGGCAAAGGCTGTATGTGGAGGCACAAACCTGTAATCCCAGCACTCAGAAGGCTGAGTCAGGAAGATCACTTCAGGTTTAAGGATACAGAAAGAGGTTCAATAAGAGGGAGACCCACCCCAAAAACTCATAGTGGTACATGCCAGTAATTCCAGTACTTGGGAAGTAGAAGCAAGAGGATCAGAGGTTCAGGGTCATCCTTTCTATATCACAGGTTCAAGAGCAGCCTGGACTCCCTTTCTCAAAAACAGAAAAGGTGGCAGAGGTAGTAAAAAAATGGCCATATCCCCACCCAGTCCCTATTGCCTGCAGTTTGTTTCTACATTTGTCTAAGCCAAAGGACCAGTATCATTCTATAGACTAAAGGTTCCAACTAGTCCCAATTTCTCCCCAGAATCCTACCCTGCTTAAGCTCTGGTCCTTGTCTCTGGTCTTGAGGTACGCTATAGCTTCTCAGAGCTAGGAGAGCAATAGACTGTGGAAGGTGGAACAAGGCTCTGGGTTCTAAGCATAAGAACAGAGAGAGGGCCAATCCCTGATCCACATCCCTTTTGGGACAAACAGCTTTGTATGGGGTCTCTGGTGAACAAGAAAAGGCTAAACAGGCCTGGCTACCTTTCTGGACCTGGGTACCTGTAGCCTCCCCTGCTCTTAGGAACCCTTCATACTTTATCCAAGACATCAAACTCACTTAGAAAGGTGAAGCTTTCCTTTCCTCCTCTCTTCCTCCTTTTGAGGAATGTGAGGTTCCTGCAGGGGTGGCTATGATAGGAGCCTCTACTAGAGGCCTTTTGGCTGAAGACTCCTGTTGAGTCACCAAACTTCTTCTGGGGAGACATGCTTGGGATAACATGCTTGTCTCCTCAATCCAGTTAGGGATCCCAAAGTATGGATACCACCAGAGTCCAGCTTGGTGAACCAATGAGTTTTGTTGGGGTAACTTATATCCATATGAATGAGGAGTTCCTTACAGGAGCAGAAATGAATCAAAGACTGCATCACCAAAGCCCACCCAAGCATGGGTGACAGCTCACACAAGCTGGGAACCTGGAGCACCCTGCACAGCCTTCCCATGCAACGGTCTGGTCTGGATCTTCTTGCAACCTTTCTTCTCTGAGATTCAGCTTTTATTGCTTATTGGGCCAGGAGGGCCTAGTCAATCTGGTCAGTTTCAGGGACTTCCTGAAACTATTTTCAGTTGTTTGCCTTCTTGTTTAAAGAGCTCTGCAGCATGGATGTTTCAGTTTAGGAGGAAACCGTTAACCAAACTCCTCATACTGCTCCATTCTATGAAAGCTTTACCACTGACTTAGACCAAGGGAGATCAAGGGACACAAAGGGATGCCAGAATAGTCATTGGTGCTAAAAGCCTGAGCTGAGACCCAAACCAGTATAGCTTTCCTCCATGGTTATTTGCAGGGAACCTGATGGCCACTGTCTGCTGGCAGGGTAGTGGGTACCTGGAAGCACCCATGGATTGAAACATTCCATATTGGAGGGGCTGGCTGGTCTTCTAGAGAATGGCAGTTCAATACACAGCATCCACATGTTGGCTCACAACTGTCCGTTGTCAAGGGATCTGAAATGCCTTTCTGAGCACCAGACATGTACGTGAAACACAGACGTAGCTTGCAGACAAAACATTTACATGCATTAAATAATGATGTGGGAATGTAACTCTGTTAGATTACTCGCCTACTATGCATGATACCCTGGGTTCAGTCCCTAGTACTGTACAAACCGTGTGTGGCACAGTCTGTAATCATAGCACTGAGGAAGTGGAGGCAGGAGGAAAGGAAGTTCAGCATCATCTTTAGCCATATAGCTAGTTCAAGGCCAGACCCTGGTACAAGAAACATTAACCAGTCTTATTTTCAAAAAAATTAAAAACAACAAAAGTTAGGTGTGGTGACACACGCCTTTGATCCCACTGCTCAGAAGGCAGATGTAAGTGGATCTCTGAGCCTTAGCTACAAAATGAGTTCCAGGACAGCCAGGGCTTCACAGAGAAACAAAACACCATGACTCCACAATTATTTGAATCACCAGTTATTGGTCAGTATTCAGGGTAAGGTCTAAATAGACTGTATGCTATGTATGTGATGTGGCTGTCTAGGCTGCTCTTGGTATAGCACGAGTTCACCTTTAAAGTAGAGCCTCGTCAGTCTGTGGTATGCCTGCTTGTTAATCCTGAGTGTTGTTTGCATCGTTCTTGTGTATCTCTTTTCATTTTTCAGAGTATAAACAACTCCCAGGTCTCTTGGTCTGTAGTTAACTCCCACTTTTTCTATTCGATTTGTTTGCTCTGTGCTGAAAGGACCCCACTGTGAGCCGGGGGCAAGCCCTGTTTCTCTGGAAGGCAGTGCCTGTCCACCAGAGCCTCTTCCAATTAGGAACACAGTCCTTACACAGCCTGAAAAGCTGCTGATTTTTAAGATTTTTTTTTGTTTGTTTTTTGGTTTTTTTGGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGAATAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGCGTGTGCCACTGCCGCCTGGCTAAGATTAAATTTAAATGCAAGAAGCCATGTTGACTGACAGCCTTGGCAGCTGGACTCAGAGACTTGATTTGATCCGCTTTGTTCATCCGACTACAAGTATGCGGTTTACCCAGGCTTACCTGGCAGAGCTTCTCACCTAGAGTTGCCCCGAGAGCTGCCCCTGCACCTTAAGCGCCTGTTTCCATGGTTTTGTGGCCTGATAGGCTATTGTAGCCAACAAAACATGCTAGTGACCAAAGATGTGGAGCAGAAGGTGGCACTTTCTGGTGTGGTTCCCCATGACCTATATCCTCCAAGCCATAAAAGCTGAGCTTGCAGGCAGCCAGACCTCATGTCTCTCACAGGAACAGGCGGTAGAATGGGGAAGAAGCATACTCAGTTTTGTCTACTTCCTCTACAG
Seq C2 exon
AGGGAGACACTACTGAGGCAGCTGGAGACAAACCAACTAGACATCGATGCCACACTAGAGGAGCTATCAGTGCAGCAGGAAACCGAGGACCAGAACTACAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015087-B230208H17Rik:NM_001024616:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: