GgaINT0126012 @ galGal3
Intron Retention
Gene
ENSGALG00000002982 | F1NAR8_CHICK
Description
NA
Coordinates
chr17:7607792-7611150:-
Coord C1 exon
chr17:7610939-7611150
Coord A exon
chr17:7607945-7610938
Coord C2 exon
chr17:7607792-7607944
Length
2994 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGGCTTTGTCCCCTCCCAAGAGC
3' ss Score
4.89
Exon sequences
Seq C1 exon
GGCTGCTCCTGGACTGGCGCTGGCTGGCCGTGGCAGGGGAGGTGCCCGTGCTCACCATGATCCTCCTGCTCTGCTTCATGCCCAACTCGCCCCGCTTCCTGCTCTCCCAGGGGAAGGAGGACGAGGCCCTGCGCTCCCTGTGCTGGCTGCGAGGCAAGGACACAGACTATGCCCAGGAGTACGAGCAGATTAAGGACAGCGTGAGGAAGCAG
Seq A exon
GTGAGGACTGGACTCACCTCCAGCATAAGATAGGAAAATGGAAAAACCCAGCCTGCTTCGGGCAGCTCCTGAGCCGCTTTCTGTGTGTTGCAGCTGTGCTAATGTGTCGGCTTTCTGGCTTTGTCCCCTCCCAAGAGCCAGCGGATTTCCTGTGCTGAGATCAAGGATCCCTTCATCTACAAGCCCATCCTGATTGCTGTGGGGATGAGGTTCCTGCAGCAGCTCTCTGGTGTCACCTGTGTCCTCGTGTACCTGCAGCCGATATTCAAGAAGACGGCCGTCATCCTGGTGAGCCCCTGGTGCAGCCCAGTGCCCTGCAGTCAGAGATGTTTGCCACGTCCCATGCAGATCCGAGACCCCGACCCTGCAGCCTGTTTTGAAGCAGGTCTCCCACTTCAGCTTCCCCACCGCTTTTGCTGTTGCAGAAACCGGAGTACGATGCAGCCCTCGTGGGCCTGGTCCGGCTGTTCTCAGTGGCCATCGCTGCTGTGTCGATGGATAAAGCTGGGAGGAAGATCCTTCTCTTTGTATCAGGTGTGTGTCTCTGTCTCAGGTTGTGCAAAGGAACCTTTTCTCTAAGGATTTCCAAAAGGTTTGTAAATGTGCAGGAGTGGAGGCTTCCGCCCATGCAGGAATGTGNNNNNNNNNNACGGCAGGCAGCAGCTGCGTGGCCGCCACCATGGAGCCGAGCGTGCGGGAGCCGTTGGTGAGGTTGTCAAGCTCCTCATACCACACCTTCCCTGAGAGCATCCGGAGGGGGCTGGACAAGGAGTACCTGCAGTAAGAGCCAGGCTGCCGCTGTGGGGCTGGATGTGGGGTGGCCGTGCACATCGACCTGGGGTTTGGGAGCTGGGAGTGGGCTGTGGCCCCGTGGTTGTTGTGAGAGGGGGCTCATCCTGAGCGGGGCTCGTGGTGCTGGGGTTTGTGTGAGAGCCTTGTGTGTGTGGGATGCGGGGCACGGGGCACTGCTGTGGGGTGGCGGCAGGGAGCTCTCTGGGGCCGTGGTGCTGCCCGCTCCCAGCTTCTGCTTTTCCGTTTGTTGAACTGGCTGAGAAGCAGCTGGCTCAGCTGAAACTCATCCATGGGGGAAAGCTGCTAAAGAGTGAGCTGGAGTTTCCAGCGGGTGCCATAGAGGTGTCCGACACGTCCTTCTTTCTCTGCCCACCTCCAGGAGCCTCAACAACAAGCGGCTCTACATGGCAGTGTTTGCTGCCGTGCTGGGGAACTTCAGCTTTGGCTTTGCCCTGGTTTACCCCTCACCCGTGATCCCTGCCCTGGAGACTCACCCCAACCCCGCGCTGAGGCTGGACCGCTACAGAGCATCCTGGTTTGGGGTGAGGTGCGGGACCGTCGCCACTGGGGGGGATGCAGGGAGAGCCAGGCTCCACCAAAGCCCCTCTGTGTCTCCCCGCAGTCGGTGTTCATGCTGGGGGCGGCGGCGGGGGGGCTCAGCACCATGCTTCTCAATGACCACCTGGGCCGCAAGCTCAGCATCATGTTCTCAGCCGTGCCCTCCGCCGTGGGATATGCGCTGATGGCCAGCGCCCAGGGCATCGAGATGCTGCTGCTGGGCCGCGTGCTTACGGGCTACGCCGGTGGCGTGACGTCTGCCTCCATCCCGGTATGTGTCCTAAGAGTTTGTCTGATGGGAGGTGAGGTGGAGCTCAGCTGGGGCCTCGTTCTGCTTTGGAGGCATCAGCAGAGCTTCAGGGCTGTGGCTGTGCCATAGGGGGTGGGGGTGCTAGATGGGCTGGGAAGGATACCCCAGGGTAGTGGTCTCGCAGCACATCTGTCCCCATTCTGCTGGGCTTTTCTGGACCACAAAAAGTGGAAGGCAGGCAGGTCCTTGTTCCTTGCTCTGTTCCTCCACAGAGTTGTTTCCTCTCTTATTCTACCAGACTCTGACCTCATGACACATACAGAGAGGAAGGCAAAGATTGAGCAACCCTCGGCTGTCTCTAAAGAGTCATTGGGGTCTGAGCACTCCTCCCACATCGGCCTAAAGGGGGGTGCTGCAGGGCTTCCCTGTCCCACTGCCAGGAANNNNNNNNNNGAGCATCACATCCAGGGCCGTCACACGGATTGCTCTCCCTTTCATCCTTCTGCGCTGTTGCATCTCTCCACAGCTGGAGTCATGTTGGCCTCCAACCTGACCATGGGGCTCTACATCCACTTGGTGCCGTCTTCTCAGAATAGCACCATCGCCAACAGGACCCTGGGGAGCCTTGCCAGCCCTCCTGCTGAGCCCACCAACTACATCACCCTCATCCCCCTCCTGGCCGCCATGTTCTTCATAATGGGTAGGTGCAGAGAGCAAAAGCCCGGGGCTGGGTATGAGCCTGGGGGTGTGTTTTTTTCTCTTGGGGATGATAAGGAACAAGGAGGTCTGTGCTTGGGGTTGGAAGGGACACAGACCTCCCTGGCAGGCTAAGATGGCATCTGAAGTCACTTTCAGGATGGATGGAGTGTGTACGGTGGGGAATAATGATGAACTGGATGAGGTGGGATTGTGCTATGCTCACCTAATAGGCTCTGAAGCCTCACCGCTTCACCCCCCTGCAGGCTATGCCATGGGCTGGGGGCCCATCACCTGGCTGCTGATGTCGGAGATCCTCCCTCTGAAAGCCCGTGGGGTGGCATCGGGTCTCTGTGTCGTCGTGAGCTGGCTGACAGCCTTTGCCCTGACCCAGCTCTTCCTTGGGGTTGTGGTGAGTACAGCCCTAGAGGCATCCAGGATCTCTTCCTTGGAGTCCCCCGCACCATCTCACGTCTGCATCCCATCCCTCTTTCCAGGAGTTCTTTGGCCTCGAGGTGCCATTNNNNNNNNNNGAGCAGATTAAGGACAGCGTGAGGAAGCAGGTGAGGACTGGACTCACCTCCAGCATAAGATAGGAAAATGGAAAAACCCAGCCTGCTTCGGGCAGCTCCTGAGCCGCTTTCTGTGTGTTGCAGCTGTGCTAATGTGTCGGCTTTCTGGCTTTGTCCCCTCCCAAG
Seq C2 exon
AGCCAGCGGATTTCCTGTGCTGAGATCAAGGATCCCTTCATCTACAAGCCCATCCTGATTGCTGTGGGGATGAGGTTCCTGCAGCAGCTCTCTGGTGTCACCTGTGTCCTCGTGTACCTGCAGCCGATATTCAAGAAGACGGCCGTCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982:ENSGALT00000004719:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(17.0=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]