MmuINT0146120 @ mm9
Intron Retention
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:26879703-26880313:-
Coord C1 exon
chr2:26880105-26880313
Coord A exon
chr2:26879856-26880104
Coord C2 exon
chr2:26879703-26879855
Length
249 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
ACGGCAGCTTTGTGTTCCAGAGT
3' ss Score
4.35
Exon sequences
Seq C1 exon
GTCTGCTGCTACCTTGGCGATGGCTTGCTGTGGCTGGAGAGGGGCCGGTTCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCTCCTCGCTTCTTGCTCTCAAAGAGCCGGGATGAGGAGGCACTGCAGGCGCTGACCTGGCTGCGAGCTGACTCCGAGGTCCATTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
Seq A exon
GTGCAGCATGTGTGGTAGAGCTTGATCAGGCCCCGACAGAGAAAGCTCTGTGTAGCCTCGGACAGTCACTAGACCTCTCTGTGCCTTGGTTGGTTGCCTTTCCTCAAACAAGAGCGAGCGGTTCCTGCTAGTGTGCAGAGCCCTTGCAGCCTCCTGTGGTTGGGCCTCTCCTAGACTCACAAGTGCCAAGACAGGGTGGCCAGGGCTAGAGAGCCTGGCATAGCCCTCAACGGCAGCTTTGTGTTCCAG
Seq C2 exon
AGTAGCCGAGTGTCGTGGGCGGAAGCCCGGGAACCCCGTGTGTACCGGCCTGTTCTCATTGCAGTACTGATGCGCTTTCTGCAGCAGCTGACAGGCATCACACCCATCCTGGTGTACCTACAGACCATCTTCGACAACACATCCGTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067-Slc2a6:NM_172659:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.3=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCTTCATGCCCAACTC
R:
CACCACGGATGTGTTGTCGAA
Band lengths:
292-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: