HsaINT0152347 @ hg38
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133474961-133475611:-
Coord C1 exon
chr9:133475400-133475611
Coord A exon
chr9:133475114-133475399
Coord C2 exon
chr9:133474961-133475113
Length
286 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
GCGGCGGCCTTGTGTTTCAGAGC
3' ss Score
7.89
Exon sequences
Seq C1 exon
GCCTCCTGCTGCCGTGGCGCTGGCTGGCTGTGGCCGGGGAGGCGCCTGTGCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCGCCGCGCTTCCTGCTCTCTCGGGGCAGGGACGAAGAGGCCCTGCGGGCGCTGGCCTGGCTGCGTGGGACGGACGTCGATGTCCACTGGGAGTTCGAGCAGATCCAGGACAACGTCCGGAGACAG
Seq A exon
GTGCAGGAGGGTGTGCGCCCGAACCGGGCAGGCCCACCTCCAGCACTTCAGCTGTGTGTGGCCGTGGAGGCTTTTCCTGGAAGACAGGACCACAGTAGTTCCCACTAATCCAAGTGCCTGGGTTGGGGTGGGGGGCTGTTCCCAGAGCCTGGGTGGCCTGGTAAGCTGGTTCTTTCCTGGAGGAGGGAAAAAGGAGGTCTCCCACACAACCCCTGGCGGTCCAGGGCAGGATGGCGCCTGCTGGAGAGGCTGGCCCAACGCCCTCAGCGGCGGCCTTGTGTTTCAG
Seq C2 exon
AGCAGCCGAGTATCGTGGGCTGAGGCACGGGCCCCACACGTGTGCCGGCCCATCACCGTGGCCTTGCTGATGCGCCTCCTGCAGCAGCTGACGGGCATCACGCCCATCCTGGTCTACCTGCAGTCCATCTTCGACAGCACCGCTGTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326:ENST00000371899:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(22.9=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCATCATGATCCTGCTGC
R:
GGTGCTGTCGAAGATGGACTG
Band lengths:
305-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains