GgaINT0126050 @ galGal3
Intron Retention
Gene
ENSGALG00000004548 | NUP188
Description
NA
Coordinates
chr17:5975492-5976260:+
Coord C1 exon
chr17:5975492-5975561
Coord A exon
chr17:5975562-5976192
Coord C2 exon
chr17:5976193-5976260
Length
631 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTTCATCTTGTCTTTGTAGCTC
3' ss Score
10.13
Exon sequences
Seq C1 exon
GCCAAAGTTTTGGGAAAATTTGACTAATCCACTCTTTGGGACTCTTCCTCCGCCTTCAGAGACGTCAGAG
Seq A exon
GTGAGTTACATCAGGGCAAAACGGAGGCAGCTTTGTACTTCTCAGATGGGTTTCTAAGTGTGTGTGGCTGCTGTTTGTGCTTTTGGCTTTCTAAAAAGCAGTATGACTAACTGGTTTCAACAGAGGCAGGAGCTGAAGCATATACTTGAGCTCTTTGCAGAGAATGGCTATACAGTAGTGGATCTTCAGAAATTCTCTGCCCTTTTTTCACATGTGAAATCAAAATAGATGTTATCTGGCATCTGTGTTTACATTGTCTGGAAGATGTGCTGTACGTAGTGCACCTGTACTGTGTATGCTGTCTGACTCCTTGTTTTTAGGCACAGCTTGGGCTGGCTAGTGTCAGGGAGGAATCAGTGAGGTTTTTTGCATTCTTCCTTTCTGTGGGTGTTTTCCCCTTCGTTATGAAAGTCCTGTGCCCTCACTCAGTTTGACTGCCACTTTGAATCCAGTATTCCTTCCTTGTCATCGTCAGTCTCTGTCAAATGACATAGCTATTGCTATCATGGGAGAAACAAGTCTGCCAAACCGGATTATCAGTTACTGTGAGCGGGTGGGTAAGGTTAAATTAGAGTTCCACTCACTCTGCAGAGCAAGGTGCTCAAATTTTGCTTTCATCTTGTCTTTGTAG
Seq C2 exon
CTCAGTGTCTTGGATACCTGTGCCTTAATCATGAAAATCATCTGCTTGGAGATCTACTATGTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548:ENSGALT00000039668:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]