BtaINT0002240 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99497331-99497858:+
Coord C1 exon
chr11:99497331-99497400
Coord A exon
chr11:99497401-99497790
Coord C2 exon
chr11:99497791-99497858
Length
390 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTGCTCTCCCCCTCCACAGCCC
3' ss Score
11.61
Exon sequences
Seq C1 exon
ACCCAAGTTTTGGGAGAATCTAACGAGTCCGCTATTTGGTACGCTTTCTCCTCCCTCGGAAACATCTGAG
Seq A exon
GTGAGTGCTGAAGGGAGGGACAGTGGTGGAGAGGCCCTGGGAGTGAAGGCTGGGCTGAGACTGGGCTGTGGAAAATGTCTACCCCCACCTGACTAAATGACCAGCACGTTTTCTTCACCTGGAACTTCTTTCTCAGAGAAGCACTTGTCTCCTCTCCTTTGAAGTCTTGCTTTGGGAAGGAGGGTAGCATGCCCTGCTCTGTTGCTGGCTCTGTGGTCCCCACTCACTTCGAGACACTGGACCTGACGCTTCTGCTCTTGCAAGTTAGATGCCCACTCGCTAGGGAACGTGCTTTCTTGTTTGCTAGTGCCGGTCCCTGTTCTGGCCCACGTGGGAGGGAGGGGCCCCAGGGGAGAGGTTCTCACGACTCTCTGCTCTCCCCCTCCACAG
Seq C2 exon
CCCAGCATCCTGGAAACCTGTGCCCTAATCATGAAGATAATTTGCTTGGAGATATACTATGTAGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(4.6=100)
A:
NA
C2:
PF118943=DUF3414=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development