GgaINT1020143 @ galGal4
Intron Retention
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5420246-5421014:+
Coord C1 exon
chr17:5420246-5420315
Coord A exon
chr17:5420316-5420946
Coord C2 exon
chr17:5420947-5421014
Length
631 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTTCATCTTGTCTTTGTAGCTC
3' ss Score
10.13
Exon sequences
Seq C1 exon
GCCAAAGTTTTGGGAAAATTTGACTAATCCACTCTTTGGGACTCTTCCTCCGCCTTCAGAGACGTCAGAG
Seq A exon
GTGAGTTACATCAGGGCAAAACGGAGGCAGCTTTGTACTTCTCAGATGGGTTTCTAAGTGTGTGTGGCTGCTGTTTGTGCTTTTGGCTTTCTAAAAAGCAGTATGACTAACTGGTTTCAACAGAGGCAGGAGCTGAAGCATATACTTGAGCTCTTTGCAGAGAATGGCTATACAGTAGTGGATCTTCAGAAATTCTCTGCCCTTTTTTCACATGTGAAATCAAAATAGATGTTATCTGGCATCTGTGTTTACATTGTCTGGAAGATGTGCTGTACGTAGTGCACCTGTACTGTGTATGCTGTCTGACTCCTTGTTTTTAGGCACAGCTTGGGCTGGCTAGTGTCAGGGAGGAATCAGTGAGGTTTTTTGCATTCTTCCTTTCTGTGGGTGTTTTCCCCTTCGTTATGAAAGTCCTGTGCCCTCACTCAGTTTGACTGCCACTTTGAATCCAGTATTCCTTCCTTGTCATCGTCAGTCTCTGTCAAATGACATAGCTATTGCTATCATGGGAGAAACAAGTCTGCCAAACCGGATTATCAGTTACTGTGAGCGGGTGGGTAAGGTTAAATTAGAGTTCCACTCACTCTGCAGAGCAAGGTGCTCAAATTTTGCTTTCATCTTGTCTTTGTAG
Seq C2 exon
CTCAGTGTCTTGGATACCTGTGCCTTAATCATGAAAATCATCTGCTTGGAGATCTACTATGTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548:ENSGALT00000039668:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]