GgaINT0126095 @ galGal3
Intron Retention
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9705524-9705825:+
Coord C1 exon
chr17:9705524-9705614
Coord A exon
chr17:9705615-9705813
Coord C2 exon
chr17:9705814-9705825
Length
199 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AATAGCAGAACTCCTTGGAGGCT
3' ss Score
-8.35
Exon sequences
Seq C1 exon
GTTACCAAGGAATCCAGTGTGAGGTGGACATCAATGAATGTATAAGCCAGCCATGCCAGCACAATGGAACATGTCATGATCTTATTAACAG
Seq A exon
GTGAGAAATCAGTATTTGTGCAGTTAGATACCAGTACGGATGTAAAATTCTGCTTAGTGTGACCTAACCAAAATTGGAGTAGAAATCCATGGAAAGAATTGGATTTAGTGTTTCCTACATTCCTACAGTGGTAGTAACTGAAGGAGTGATTAATGGCAGCATGTGAGAAGGGCCCTTTCAATAGCAGAACTCCTTGGAG
Seq C2 exon
GCTTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169:ENSGALT00000038754:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(12.1=12.9),PF0000822=EGF=PU(50.0=61.3)
A:
NA
C2:
PF0000822=EGF=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]