GgaINT0126277 @ galGal3
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10292027-10292495:+
Coord C1 exon
chr17:10292027-10292179
Coord A exon
chr17:10292180-10292399
Coord C2 exon
chr17:10292400-10292495
Length
220 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
AGGCAGTCTTTATTTTACAGAGC
3' ss Score
5.09
Exon sequences
Seq C1 exon
CAAATGGATGTAGAAAATGAAAGAAGTAAACTACAACAGCAGGTTTTAAGTGAGAAACATCAGTATGAACAGAAGATTTCTGAGCTAGAGTCTCAAATTGCTGCTCTTCAAACAGCTTGGGAATTTGATAAAACAGCTGCTCAGCACAAGATA
Seq A exon
GTAAGTACAGAAACTGTTGAGTGGGACACTCAGGTCTTCACAGAATGATTTTAACAAAGCTGATGGACCTTGCATGATGTCTGAATGTGCTTACTCAGAGTTCCCAGCATTGTAGTAGAAGATCTAATACTTTGAAAAGCTAAGTATGAATTGAATGTATTTGTTTATGCAAAGCATTGAAACACTTGTACTTAGTACTTAGGCAGTCTTTATTTTACAG
Seq C2 exon
AGCCAGCTGGAAAAGGAAAATGAAAATCTTAATGGAAGCAGAGAAGAGTATGAGAGTTCTTTAAAAAAGCAAGAATCTGTTCTGAACAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAAGTAAACTACAACAGCAGG
R:
AGTTTGTTCAGAACAGATTCTTGCT
Band lengths:
228-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]