RnoINT0066234 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23325550-23326264:-
Coord C1 exon
chr3:23326115-23326264
Coord A exon
chr3:23325646-23326114
Coord C2 exon
chr3:23325550-23325645
Length
469 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTGCTCTGCTCAATTTACAGCGG
3' ss Score
8.15
Exon sequences
Seq C1 exon
ATCACTACAAACCAAGAGAACAACCTTTCCCAACAGCAGGTTCTTGCCCTGGAGCAACATTGCAGGGAGCGCATCCATGCACTGGAGGCCCAAATTGAAGCTCTGGAACAAACACGGGCGGCTGACCAGATAGCCTCTGAGCAGGGAATG
Seq A exon
GTGAGTGGAGTGGGAGTCAGCACACTCAGGAGCATTTTGTCACTACAGCTGAGCAGAATGGTGCCTCTCGGGCTGGGGAACCACTTGAGAGGGCAGTTCACCTTTCCTAAAGGATTCAACCTGCTTAGGAATCTGGAGGCCAGAGATTGTATGTGAGCTGTCTTCCTCGATTGCTTTCCACCTTACTTTTGAGATAGAATGTCACTAATTTGGCCAACAAACCCCAGAGTTGCACCAGTCTGCACAGCACTGGGATTACAAGTGTGCAGCATCACTCCCAGCTTTTTCACATGAGTGTTGGGAATCTGAATTCAGATCCTCTACCTTCCTAAGCACTTTACCAACTAAGTCATTTCCTGAGCCCAAGAAAGGTTATTTCAAAAAGACAGTGTTGGAGAGATCAGAGTGTGGCTAGGAGGCAATATGGCAGGTAAGACCTATTCTTATAAGTGCTCTGCTCAATTTACAG
Seq C2 exon
CGGCAACTGCAGCAGGAAAATGTGGCCCTTAAAGAAAGCAGAGATGAGTGTATACAGTCCTTACAACATCACCAATTGGAACTAAAGAAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTACAAACCAAGAGAACAACCT
R:
CTTGAGTTTCTTTAGTTCCAATTGGT
Band lengths:
246-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]