MmuINT0072136 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39033157-39034210:-
Coord C1 exon
chr2:39034061-39034210
Coord A exon
chr2:39033253-39034060
Coord C2 exon
chr2:39033157-39033252
Length
808 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTGCTCTGCTCAATTTACAGCTA
3' ss Score
8.29
Exon sequences
Seq C1 exon
ATCACTACAAACCAGGAGAACAGCCTTTCCCAGCAGCAGGTTCTTGCCCTGGAACAGCATTGCAGGGAGCGCATCCATGCACTGGAGGCCCAAATTGAAGCTCTGGAACAAACACGGGTAGCTGACCAGATAGCCTCAGAGCAGGGAATG
Seq A exon
GTGAGTGGAGTGAGCGTCAGCACATGCAGGAGCACTGTGTCACTGCCACTAAGCAGAATGGTGCCTCTCTAGGCTGGGGAACCACTTGAGAGGGCAGTTCACCTTTCCCATAAGTATTTAAACTGCTTAGGAGACTGGAAGTAAAAAGACTTCTCTTTACAGAGATGCACAGCAGATGTGTTCACCACAGGGACAACTCCCTGATCTCTAATATTCCCCTTGGGTTTTTCTGAAATCCATATTGTCCCTTCCTAATGGCTTCTCTCTTCTACAATGCCTCTGTGTCCTACAGTGTTAAGAGACGTGATTTTCTTAAGGACCTAGAGATCGAGCCTCATACCTGCTAGGCTCTATAGCTGAGCCACTGTCCCACCCCTGGAGAGTTCCAGGTTTTCTTCCTTGTCCCTACCTGTTGTTTACTCGATGCTTACGGTGACTGAAATAAAGGTAATTTCTTTAATGGAGGCCAGAGATTATATATGAGCTATCTTCCTCAGTTGCTTTCCATCTAACTTTTTGAGATAGAATGTCACTAATTTGGCCAGAATAGCTGACCAACAACCCCCAGAGTGCCACCAGGCTCTGCCCAGCACTGGAATTACAGGTGTGCACCACCACTCCCAACTTTTTCACATGGGTGTTGGGAATCTGAATTCAGATTCTCATACCTTCATAAGCACATTATCAGCTGAGCAATTTCCTCAGCCCAAGAAAGGTTATTTCAAAAGGACATCAGAGAGATCAGACTGCTTATGAGAAAATATGGCAGGTAAGGCCTATTCTTATTAGTGCTCTGCTCAATTTACAG
Seq C2 exon
CTACAACTGCAGCAGGAAAATGTGGCCCTTAAAGAAAGCAGAAATGAATGTGAACATTCCTTACAACATCACCAATTGGAACTAAAGAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.469
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAAACCAGGAGAACAGCC
R:
GTTTCTTTAGTTCCAATTGGTGATGT
Band lengths:
238-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types