GgaINT0126293 @ galGal3
Intron Retention
Gene
ENSGALG00000000972 | F1P3W1_CHICK
Description
NA
Coordinates
chr17:10543752-10547883:+
Coord C1 exon
chr17:10543752-10543841
Coord A exon
chr17:10543842-10546320
Coord C2 exon
chr17:10546321-10547883
Length
2479 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AATTGTTTTTCCCTTTTCAGGCT
3' ss Score
10.97
Exon sequences
Seq C1 exon
GTGGATACCCTGCGTCATGTTATCAATCAGACGGGAGGATACAGTGATGGCTTGGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
Seq A exon
GTGAGTACCCAGGGGAGCAGCAGCTGGGAGAGCCATAAGCATGGTGTCGGGTAAATGCAGTCATTAATACATGCATTAATTACTCTTGCGATAACATGTTTGAACATTGCATCTTTGGAGATGAACGGCAAAATGGCCCTTGATATGGCTGTGAGTCTTGGTCATGCAGGAAGAGAGAACATTCCTAGAGCCCTCACTATAAGCAATTCGAATTTTTATATTTTTCAGCCTTATGAGTTAAAAAGTAATAGCCTTGGAGAGAAGGCTCTTGTTCTTTGCAGAGATGGTCAGATAACTGCTTGTATTTGTTATTGCCTGCAATCAGACATCAGGACTGCTCTTTTGATATACTTTTAGCCATTTCAAGGGTGCACATTTTTCCTGTGTTTGAGAAGTAATTTTGGCCGTGTTACTTGAAAAAGAAAGAGAGTAGTAAGTCTGGCAAAGAGATGCTAGTGAATTGAGGGATGTTAGGCTGGGTTGTGCTGGGTGCTGTACGTCCCAGCCCTCACTGTGGCTGCCAGGATCGGTTGGTGCTCAGAGCCTTGCCGGCCAGGCCCAAAAAGGAATGCTTTTGTTTTACTAAATGTTTCCTATTTGCTTACCAGGCGGCTTCCATTTGTTTTCCTTTTTGTTCACAAAGTTGAAAATGACCACAGAGGGAGCGCCGTCCGGGCAGTGCCTCTCCCAGCCCAGGGCAGCTCTGTGCCCACCGCCCGCTGCTGTCTCGGTGCCCGTGGTGCTGCAGCTCAGGGCGGTGCGCGGAGCATCGCTGGGAAAGGCTCAGCCACGGGGATGTGAGCTTTTCCTCTTTGAGGGTTTCCACTTGCCACGAGAGTAAATATTAATGATTTAAAATGTGATTGAAGATGTTCAATTGTAAAGGGAAAAAAGTACCATTAAATACTCAAATCTTTTACATTTGAAACGTCAAATCTTTCTTTTTGGGTTTATAAATAACTCATAATAACCCACAACAAACCATATAAAAAGCCTTTTAGTTGCATTTCTCCTTTTTCATTTAAGTGTTTTGAAATGCTTCAGAGAATTTGCGATATCCTTATCAACATGATAAAATATGAAACTGTGATTGCCTGCAGCATTTTACAGACATGAATTCCATCTTCACTGATGAGGCCTGATAAGGCGCTGTTGTATAATACAGTGCATAATCTCAAACCACCAGAGTAAGGATTAATTTATTTGAAAAAAAGAATGCTTGCTGACAACCTCTCCTCCAGCTGCCAGGCCGAGTAAAAATATTGTACATTTGTTGTTTATAAATTTGGATAAAAGAGGAATGATGTTTACTTCAGATGGAATATCTTTAGACTCATATCTGCACAAGAGTTTTTCTTTCTCTAAGTAGATTTTCATATCTTTAAAAAATAAAAAAAAGCAGAGGTACCTTTGCACGCTGTGTGCATTGCCAGCCCCTGTCTGAGCAGCTGAGCATCTTAAAACCATGTGGTGAGGCTTCAGCCTTAATGCGATTGCAGGTCGGTATTGCCATTAATTTTACTTAAGGGAGCACAAACTCAAACCTTAGAATTTGTCACGATAAGGGCTTCTCTGTTTGCTGTTTTTCATCTGCACAGCAGACAATTACCAGGCTGTGCGCTTGTCCTGGCGGTGCTGAGCGGTGCCGCAGCGCGGTCCGGGGCTCAGCGTTAGCACAGGGCAGCCCCTGGGCCCGGCCAGGCGGAGCGGCCCCACGAAGGCTGCGGGGTGCCGGGGGGGGGCAGCCGCCCCGTCACTTCCACTCAGCCTCCCCCCACTCACGAGCCCTGTGCCGCCCTCCTCCTGACTGACACCAAAATATGTAGCGACAAGCTGTCTGCCACAGCAGAAATCTGATCAGACATTGATTTCAGCAATTGCCTCTACGGGCCGAGACATAAGGCAAATTTGTTTCTGAGCACTGCTATTGCTGATGCAGGTCTAATGCGGGGAGGGCCGGCGGCGAGCGGGCGCAGGGAACGGCAGCCCATGTGGGGCTGTGCTTCGGGTAATTGGCAGAGGGATTGAGGGCCCCTTCCTGCCCTGCCTGCACCGCTCTGTGGGCTCAGAGGAACCCGGATTCCAGCACAGAGAAAGGCAACTCCCAGCTTTGGAGCTGAGAGGAGAGAATGCGTTAAGCACTGCTGCCCCTGAGCCATTTTCTCAGGAAAAATAACCCGAAGCATCGGCTGAAGGGATGCGCTTCGTTAGCGTGAGAGTGGAGATGCAGAAATCCCAGCACTGCTGTTGTGGTCAGCACCTGGCTGTAGGACGCCCGCTGTAGGACGCTCCCATCAAAGCACCTCACACACAGCACGTGTGGTTTTCTCCTCACAAATTCTGCAACCAGAGGGAGTTTAGGATAAGCTCTTTCCCAGAGCATCTCCCCCCAGCTTTGGCCTTGCCACTTTGTTACTTTCAGTGCATGATATAATTAATATGCGTAATTGCATCAATTGAATTGTTTTTCCCTTTTCAG
Seq C2 exon
GCTAATGGAGGCTGGCAGGACGCAACTACTCCATCTTCTGTGACTTCCCCTACAGAAGGGCCGGGAAGTGTGCACTCTGATACCTCTAACTAATCTCCTAGCAACACTTTTTCCCTGAGCTGAGATGCCTTCATCAGCGCAGTCAGAGTCGCAGGAGAAAAAGGAAAGAATTTTTTTGTAGCCAACCACCTACAGCTTTACTGTAAAACCTTGTCTTACTAGAAAACTTGGTAAATCTGTTTTTTAAAGGTATCATAATCATTTGTATTTATACTTAAAACACACAATGTTAAAAAGCACTTTATCCAATTGGGCCAAGATTTAGCATTGTTTGTAGCCCTGTTACTATTTTATCATAATTTATTATCGGCGATTTTAACAGTGTCGGTCTAACAGTTGCCAATTACTTGGCCTTAAGGGTAAAAGTACAGTACAAGCTTAACCTCAAGAGCAAGAGCGGGCACAAAGGAACAGCTCACCTGAATCTCAACTGCGTGCATATTTTCGCGGGAAGTCAAAATGAGTTACAGACTTGGGTTGCGTTTAGCCTTTTCATCTCTCTTACAGAGTTGGAATAAAGAGGTCTGCTTGGTTATTTCGGTTAACAGCGGTTGTGTTTAAGAATCCTTATTCGTCACATTTTTGTTGTGATCTGTTGCTTTGTAAGTTAGGTTGGGTACCAGGAGCATCTTTCCTTGCTGACCGCCAGGACCCCCCGCCTGCTCTCTGTATTTCGGCAATGGACTCAGAGTGTTCTTAAGAGGTGAAGATATTGCTGCTTCTTTCAGTGAGCCACCAGCTGGGTTTTACAGTACGAGTAGGTGCTGCGCGGCTGCCGAGATCGGTTACTTCTTCTGGGCAGCCAAACAAACACACAGAAAACAAAAAGGAAAAGCGAAGGAAAAAGCACCATTATATGGATTGTTGTACATAGTGTAGCAAAAGAGTATTTATACATCTCACCAATCAAAACACAGCTTTATTACCTCATGCGAACTCATACGAACCAATAGACTTTCAACATGTTCTGTAGCTTAGAGTGCTCACTTACTACCTCTGAACGATACTCACGCTGTAGTTTGTCTCTTTCTTATCTTTTTGCATCTTGTAATTAACTCTTTGTTTCCCTCATAAATTGTAATGTACATTGTAATCTTTTAAAAGAATCAGGGTTGCGTTTGCAACTTTTAAAAGAGCTGAAGTGGAAACATTGGGTCTTAGGTTTAACAGAACAGTGAAACTTGTAAATACTGAGAAACATTTTGAATGTTGTTCATCTTGTTACTAATCCACGCAAAAAATACAACTAATTGTAATGCATACAGACTTCAGTATCAGTACTGTATATTCACCCTGTGTAACAGGGGGCCCTTTCTTTCTCTCTTTTGTATTGTATGCGATTCTGAAACTGATTGAGTCATGAAAATAATTTGTGGCAGTGATTCTAATGTATTAAAACGTTTCGTGTTACTTTCTAACTGGATTACACCCTGGATTGAGAAGTCTTCCTCGTGGTAGTTATATGTAGTTTCAAACATGAATAAACTTTTTGCTTTCATGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000972:ENSGALT00000001436:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]