HsaINT0120874 @ hg38
Intron Retention
Gene
ENSG00000167081 | PBX3
Description
PBX homeobox 3 [Source:HGNC Symbol;Acc:HGNC:8634]
Coordinates
chr9:125963012-125967377:+
Coord C1 exon
chr9:125963012-125963101
Coord A exon
chr9:125963102-125965830
Coord C2 exon
chr9:125965831-125967377
Length
2729 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AACTGTGTTTCTCCTTTCAGGCT
3' ss Score
11.45
Exon sequences
Seq C1 exon
GTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
Seq A exon
GTGAGTACTCTGGGGAGTCAGCTGTAGGAGAACAGTGTCAGGTAAACAGTGACTAATAAAGAAATTAATAGCCATTTGACCTGGCTTCTCATCTTCTTGGCAGGTAGGGAAGGCAGCGTCTTTGCTGCACTTTTATTTTAAGAACCTAAATGCTTGATGCCGTCTAGATACCCTTAGAAGTCCTCATAGATGCCCAGAAATGGCTGGTGTCCTGTCATCAGCAGGGACTTAAGCATCAGCCCATTAAGACGCCATTTCCTACCATCAGTGCTGTGCTCCAGGGAGACGGTAGAAAACAGGTCATTTATCTTAGAACCAGGCAGCGGGAAAAATTCCCAAACAGAACTCAGGTGAAGGTGGTAAGTTTGGAGAATCCCAGGCAGACCAGCAAACCAAGCTAAACAAATAATTGTGTTATTAAAAGCATCTTGCTGTATTGTCAATGTGGGATGCACAACATATTTGACAATTTTAATTATGGAGGAAATAATTTTAACTTTTGTAACTACTTCACTACAACTTTACCTTTCCCTCCACTGACATGGATGGAAAATGGCAAAACACACAGCTCTGGAAAAGGGGGAAGGGGGCAGGGGAGCAGGTCATCGTGGTGGTGCTGCGGGGTGTGGTGGATGGAGTCTGGGGTTCTAGACTTAGGAAGGAAATTAACTGCCCAGCTCACGGTAGTAGACTCAGGAAGAAAATGGGCAAAATTCTTCCTTTTTAGGGCCTTGGCTTGCTACGAGAGTAAATATTAATGATTTAAAAAGTGATTGAGGATGTTCAATTGTAAAGGGAAAAAAGGACCATTAAATACTCAAATCTTTTACATTTGAAATGTCAAATCTTTCTTTTTGGGCTTATAAATAACTCATAATAACCCACAACAAACCATATAAAAAGCCTTTTAGTTGCATTTCTCCTTTTTCATTTAAGTGTTTTGAAATGCTTCAGAGAATGTGCGATATCCTTATCAACATGATAAAATATGAAACTGTGATTGCCTGCAGCATTTTACAGACATGAATTCCATCTTCACTGATGAGGCTTGATAAGGCGCTGTTGTATAATACAGTGCATAATCTCAAACCACCAGAGTAAGGATTAATTTATTTTGAAAAAAAAGAATGCTTGCTGACAACCTCTCCTCCAGCTGCCATGCTGGGTAAAAATATTGTACATTTGTTGTTTATAAATTTGGATAAAAGAGGAATGATGTTTACTTCAGATGGAATATCTTTAGACTTGTATCTGTGTGAGAGTTTTTCTTTTCCTAAGTAGATTTTCATACCTGAGGGGGGAAACAGCTTACCTTTTAGAGAAGAGGATTTCTGAGAGTCCACCGAACACACATGGGCATGTCATTAGCCAACCTGGCAAAACAGAGGCTTTAAAACAATACCACCATAGCTTTTTTTTTTTTTTAAATACTGTTTCCTTTTGTTTTTCCTAACCTGAATTTGATATGCCTCAAGCCTGGAAAATCCTCTTCCCTTAGGGTCTGGTCATCTCTGTGGGGTTCTTAGGTCATAGAGGTAGAAAAGGTGCTTTGCATGCCAACTCTGCAGTGAATTAGAAGACAGGGAGTTCTCCAGGAACTGTGATCACAGAAGAAGAAACAATGGCTGCCACATGCTCATCTAGGAGCTGTATCTAGGCTGGGCAGGGAATCTAGACAAGAGTTCTCAGCAGCCTGGCAGCCCAGGCCTGAAAGAGGGCATTTTGGATGGACTTGCAGAGGAAGTTGCAAATAGATGTGAGGGAGGCAGGAGGCACCTTATGACCCACCCTGACATTGGTGTAGGAGGTCCGGGTCTGGGGGCAGCATGGCGGCAGAGGGTGGTTGGTGCTGCAGGCACGGGGAGCCTGCTCACCCTCACCTCCTCTCCAGAAAGGCCTGCCCCATCACTTCCACTCAGTGTTCCCCAACTCACGAGGCTGGCACCTCCCTCTTCCTGACTGACATAAAAATATGTAGCGACAAGCTGTCTGCCACAGCAGAAATCTGATCAGACATTGATTTCAGCAATTGCCACTATAGGCCAAGACATAAGGCAAATTTGTTTCTGAGTACGGTTATTGCTGCTGCAGGTCTGAGGCAGGAAGGGCCAGCAGCATGTGGAAGGTGGGAGCAACATCCCAAATAGGAGCCTCAGCCACAGATAATTGGAATACAGATTTTAACAGTGTGTGCTGCTCTGCGGCTCATGCATTTTCATTCTGGAAGATCCTATTTGGAGGGAAATTCTGGCCTTCACTTTCCAAGGGTTACAGTAGCTGGCTGTCAGGCGTGTATGGAAAAAGGGTGGGCAACTGCTTCTCTATGGAAATGATGATTAAGCCGGGGTGAAGTTTAGACTTCATGGAGCCCTGGGTTTCGCTGAGGCATTGCATTGAGCTTCTCCACTGCTCCCTTCTGAAGAGATTTCTTTTTGAGTCACTTTAGTTTTACCAGCAGATCAAAGGCCGAGCTCGATGCCAGCATGGGCCTCGCTGAAGCCCTTCTTCGGCGTGTTGATTTATTGCCAAGACTTTACTTGATGGGATGGATTTGTTTTACATGCATTTAATCCCACTTTAACACATGCTGCCAACTCCTGCCACAGTGGGTTTAGAAAATACATTTTGCTAATGCATCTCTGCTCTCATGTTGTCATCCGGGTGTTTTAAATTGGGGAGTAGAATTAATATGTAGACGTGCACCCGTTGAACTGTGTTTCTCCTTTCAG
Seq C2 exon
GCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACAGAAGGCCCAGGAAGTGTGCACTCGGATACCTCTAACTAATCTCTGGCCACACTTTTCCCTGAGCTACATGCCTTGATAAGTGCATTCAGAGCAATAGGAGGAAAAGGAAAGCGTTTTTGTAGCCCACCATCTACAGCTTTACTGTAAAACCTTGTCTTATTCGAGAACTTGGTAAATCTGTTTTTTAAGGAATCATAATCATTTGTATTTATACTTAAAAACACACAATGTTAAAAAAAATAAAGCACTTTATCCAATTAGGCCAAGATTTAACATTGTTGACAGTCCTGTAGCTATTTTATCATAATTTATTATCAATATTTTACATTAATGGTTTCACAGTTGCCAATTACTTGGCCTTAAGGGTAAAAAGTACAATATACACTAAACCTCAACCGTTAAAGCAGATGCAAAAATTCACCTCACCTAAATTGAACTTCTTGCATATTTCCATTACTGACTTGGATTGTCTTTCTTTCATATCACTAATGGAGTTGGAATAAAGAGCTGTTTGCCTATCCCTGTTAATGATGGTTGTGTTTAAGAATCTTCCTCGTCACGTTTGTGTTCAGATCTCTTATGTTATAATTAGATCAGAGACTGGTAGCATCGTTTCTCTCTCTGAAAGCACCAGTGCCCAGAGTCTGCTCGGTAATAAAATTATGGATCCAGATTGTTCTGAGAGACGAAGATACTTGCTGCTGATAGAGGTGAAAACGAGATTGATCCGTCTGGGGTTTTACGGTGTGCACTGGGTGCTGCACAGACTTGTCAAGGTTTGCTACGTCCTCTGGGCATCTGCAAAAGGCCCTGCTCTCTGGAGTGTTGTATATAGTGTAGCAAAAGAGTATTTATACATCCCACCAATCAAAACACAGCTTTATTACCTCATGCGAACTCATACAAACCAATAGAATTTCAACATGTTCTGTAGCTTAGAGTGCTCACTTACTACCTCTGAACAATACTCACGCTGTAGTTTGTCTCTTTCTTATCTTTTTGCATCTTGTAATTAACTCTTTGTTTCCCTTCATAAAATGTAATGTACATTGTAATCTTTTAAAAGAAAAATCAGGGTTGCACTTGCAACTTTTAAAAAACCGAGTGTGGAAACATTGGGTCTTAATTCAACACAGGATCGGTAAAACTGTTGTAAATACTGAGAAACATTTTGAATGTTCTTCATCTTATTACTAATCCATGCAAAAAAAAAAAAAAAAGCAGCGACTAATTGTGATGCATTCAGATTTCAGTATTCAGTACTGTATATTTCACCCTGTGTAATGGGGCCCCCTCTCCTTTCTCTCTTTTTGTATTGTATGCGATTCTGAAACTGATTGAGTCATGAAAATAATTTGTGGCGGTGATTCTAATGTATTAAAAACGTTTCGTGTTCCTTTCTAACTGGATTACACCCTGGATTGAAAAAGTCTTCCTCGTGGTAGTTATATGTAGTTTCAAACATGAATAAACTTTTTGCTTTCATGATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167081:ENST00000342287:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development