GgaINT0126347 @ galGal3
Intron Retention
Gene
ENSGALG00000009151 | FCN3
Description
NA
Coordinates
chr17:656961-657661:+
Coord C1 exon
chr17:656961-657074
Coord A exon
chr17:657075-657607
Coord C2 exon
chr17:657608-657661
Length
533 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
AACTGTGTATTTTCTTATAGGAG
3' ss Score
9.19
Exon sequences
Seq C1 exon
AGGTGAAAATAGTGGGACTTGGTGAGGCAGACCGTCTTGCTGTTCTTCAAGGATGCCCAGGGATCCCAGGTGCAGCTGGCCCAAAGGGAGAACCAGGCCTCTCAGGAAAAAAAG
Seq A exon
GTATCCGAAGATATCAGACAGCTTTCTCGTTTGTAGAAAGGATGTGTGGAGGGGACACCCCCTACCCATGGGAGTCCCTCAAGTTTTTCACAGCCAACTCATACAGAAAGCAAATCACATCAGTAGAGGGAGCAGCTCCACTGCAGCAGAAGCCACAGACTGGCTCCAGGGTATGCAGTGCTCATAGGAATTCATATGTGAGCTGTAAATCAGGACTTTGACTGGCAGTATCATAGAATCATAGAGTCATAGAATGGCTCGGGTTGGAAGGGACCTTAAAGATCATCACATTCCAAGCCCCCTACTGTGGGCAGGCTTGCCAACCACCAGATCAGGCTGCCCAGTACCAGTGTAGTATAGTTTTAGCAAAAGAAATGGAGTGAGATATGTTGTCAAATATAATCTAATGAAGAAAAAAAAAAAACAGCTTCCTTCCTTTTGCAGAAGTTGAGGCCCAGCTGTCCCAACTTCTGTTCTACCTTCCCTCTGGTCAGACTGCAGTGCACACATATAAACTGTGTATTTTCTTATAG
Seq C2 exon
GAGAAATGGGAACCAAGGGACCCCCTGGGAAAGCAGGACCACCCGGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(39.0=59.0)
A:
NA
C2:
PF0139113=Collagen=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]