GgaINT0126347 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:277812-278512:+
Coord C1 exon
chr17:277812-277925
Coord A exon
chr17:277926-278458
Coord C2 exon
chr17:278459-278512
Length
533 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
AACTGTGTATTTTCTTATAGGAG
3' ss Score
9.19
Exon sequences
Seq C1 exon
AGGTGAAAATAGTGGGACTTGGTGAGGCAGACCGTCTTGCTGTTCTTCAAGGATGCCCAGGGATCCCAGGTGCAGCTGGCCCAAAGGGAGAACCAGGCCTCTCAGGAAAAAAAG
Seq A exon
GTATCCGAAGATATCAGACAGCTTTCTCGTTTGTAGAAAGGATGTGTGGAGGGGACACCCCCTACCCATGGGAGTCCCTCAAGTTTTTCACAGCCAACTCATACAGAAAGCAAATCACATCAGTAGAGGGAGCAGCTCCACTGCAGCAGAAGCCACAGACTGGCTCCAGGGTATGCAGTGCTCATAGGAATTCATATGTGAGCTGTAAATCAGGACTTTGACTGGCAGTATCATAGAATCATAGAGTCATAGAATGGCTCGGGTTGGAAGGGACCTTAAAGATCATCACATTCCAAGCCCCCTACTGTGGGCAGGCTTGCCAACCACCAGATCAGGCTGCCCAGTACCAGTGTAGTATAGTTTTAGCAAAAGAAATGGAGTGAGATATGTTGTCAAATATAATCTAATGAAGAAAAAAAAAAAACAGCTTCCTTCCTTTTGCAGAAGTTGAGGCCCAGCTGTCCCAACTTCTGTTCTACCTTCCCTCTGGTCAGACTGCAGTGCACACATATAAACTGTGTATTTTCTTATAG
Seq C2 exon
GAGAAATGGGAACCAAGGGACCCCCTGGGAAAGCAGGACCACCCGGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(36.1=56.4)
A:
NA
C2:
PF0139113=Collagen=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]