MmuINT0063794 @ mm9
Intron Retention
Gene
ENSMUSG00000026835 | Fcnb
Description
ficolin B [Source:MGI Symbol;Acc:MGI:1341158]
Coordinates
chr2:27936416-27938539:-
Coord C1 exon
chr2:27938426-27938539
Coord A exon
chr2:27936470-27938425
Coord C2 exon
chr2:27936416-27936469
Length
1956 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
CAGGAAGTATGGTTTTACAGGAG
3' ss Score
1.61
Exon sequences
Seq C1 exon
AACTGAAGGTCCTAGATCTGGAAGGCTACAAGCAGCTCACCATCCTTCAAGGTTGCCCTGGCTTGCCTGGAGCTGCAGGGCCCAAGGGAGAGGCAGGTGCCAAAGGAGATAGAG
Seq A exon
GTGTGTGCTGGGGAAGGAGGGGATATGGAAGGGGGCAGTAATGGTGGAGGGGTCCAGAGTCACATTACTGTCCGGAAAGGACACCTCGGGCCCTCCGTGACACCAGATGCCTTGACAGAATGGCCAGTGACAAAAACAAGGTCCAACTAGTCTGAAAGGCCCAGGAGGGCTTCTCTGGACCACCTTACTTAGGTGCTTCAGGCGTGCTTTTCAGCCCCGCCCCCTGGTCCCCTATCTATGTTTGCTCCACTTGGCCACTGTAAGACATCTAGGAAACAGACACTTTCACAGCCCCACCTGAAAGCTGGGCTGTGGCTTTCTTCCTCACCTGCCTCACATAATAGAGCAGAGGCTTAAAACGACCAGCCTCTTCCTGAGCTGGCCCTCCAGTGAAGAGTGGGGCAGCCTCCATATGGGATCTGCTGCAGGGTACAGTCACTAGGACACAGAACCACAACATTAGCACTTGTGGAGACCTCAAGCATACTTGTTCTCGCCAAGTGGGGACCGTGGTTGGTACCTATGTCTCCTGAGCCAGATGTGCCCTGGGGTTCAGCAGGAGAGCCCCTTGCTTGAAGGTACTCCAGCCTGGCAATGATTTGGTGGGGACAGAACAAAGCTGGACACCTCTGTGAGAAGATGCCAGGCTTGAAGCCAATGTGGGTGGTCCCAGACTGTGTCTCACTTGCCTTCTCACCACTGTGATCCCAGTAAGGGGAGAGATATCTGTCTCCAGAGCCCCATTGAGGGACCTGGGAGAAGAGGTTGTCCCATGGCCAGGATGAGATAGCCAGCAATGGGAGAGAGGTGTTGCTTTGGATCTCACTGCCCTAGATCTAAATTGCTACCAGCTTGCATTGCTAACTTGACTCAAGGGGAGAACTAGTGTGCCCCGGGCACTGTATTGTCAGTAGGCCTGCAGAGGTGTTCTTCCAGTGACATTGCTTCTCCTGACCCTCATATCCATCTGTAGAGGATAGACAGATCCACTCCACCTTTGGGCACACCCGACAATGAAAGCTTGGAGCCTACAAGCTCCTGCAGAGACCAGTAGTGCTGTGCTGGGGCCAGAGTGGCGCCTGAGATCAGAACTTGCAAGGAGGACCTTGTAGTCACCTCACAGCTTCCATTGAGGTAGGAGACATCTTAGTCGGGGCATCCATTGCTGTAATGGAACACCATGACCAACAGCAATTTGGGAAGAAAGGGTTTATCTCATCTCCCAGCTTGTAGTCAGTCATCCAGAGAAGTCAGGGCAGGAACTCCAGGTAGGAACCTGGAGGCCATGAAGAAACTCTGCTTTCTGGTGCACTTCTCAAAGCTTCCTCTACCTGTCTTCTTGGCTCCCAGGAACACCAACCCAGGAGTGGTACCAACCACTAATCAAGAAATGCCCCATGGGCTTGCCCACAAGCCAATCCAGTGGGGGTATTTTCTCAATCGATGTCCTCACTTTCCAAATGACTCTAGCCTGTGTCAAGTTGACATAAAAACTATCCAGCACAGGTTCTTTGGGCATGATACAGCCTCAGCTTTCTTCATGAACACTGTGTGAAAGGTTTGTCCTCTCCTTGTAGAGACCTAGTAGGACAGCATCTCTGAAGACATGTCTCCCACTGTAAAGACGCTGTGGCCTAGGCCTGGACCACTCAGCTTGGACAAAGGAGCAAACAAAAGCTTAGTAACTGCGTGACCTAGTGTGCAGTCATGGGTTAGGCTATACCTCCCCCTCACACACTGAATCTTTCCCAGTCACAGGTAGGGTATACCTCACCCCTGTGTCCTCCTCAGCCATAGATAGGCTATACCCTACCCTCTGCACCCTCCTCAGTGAGACTAGCTATAGTCCTAGAGATCACTATGGCCAGCATGACAGGGTCAGGAGTTTGCCACCTAGGCAAAGACCTTCTAGGGGAATAATGGTGGATGCATTGCTCAGGAAGTATGGTTTTACAG
Seq C2 exon
GAGAGAGTGGCCTTCCTGGAATTCCTGGAAAAGAAGGACCAACTGGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026835-Fcnb:NM_010190:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(36.1=56.4)
A:
NA
C2:
PF0139113=Collagen=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: