HsaINT0063310 @ hg38
Intron Retention
Gene
ENSG00000085265 | FCN1
Description
ficolin 1 [Source:HGNC Symbol;Acc:HGNC:3623]
Coordinates
chr9:134914756-134916461:-
Coord C1 exon
chr9:134916348-134916461
Coord A exon
chr9:134914810-134916347
Coord C2 exon
chr9:134914756-134914809
Length
1538 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TATGTCTTTGGAATTTTCAGGAG
3' ss Score
7.09
Exon sequences
Seq C1 exon
AGGTGAAGGTGGTGGGCCTGGAGGGCTCTGACAAGCTCACCATTCTCCGAGGCTGCCCGGGGCTGCCCGGGGCCCCAGGGCCAAAGGGAGAGGCAGGTGTCATTGGAGAGAGAG
Seq A exon
GTAGGTGCGGGCCGGGTGGGGAGGCCAGGCATGGCAGGGGCACTGGCTCTTGCTCTTTATGAAACTGGATGCAGAGTTGGGCAACACCCCCACCGTGGTTCCTAGATCAAGAGCCTGGGTCAGGCCCCTGCTAGAGCCAGGAACAGAGCTGACTCCCAGGGCCCAACAGGGTTCTGAAATGGAGGGAGGGTCTTTCCTAACTATTTCATGAGCTCACATTTGGACATGCTTCTGTAGCTCTGTCTCCTAGTCCTTGATCCAATACCAGCTTTGCTCAGCTACTGGCACGACTTCTAAGCTCTGTGTCCCTCCACCTTCTCACCTGAAAATTGAGGTGACCGCTTTCTTCTGCACCTGCCTCATATGGGAAAACTGAGACTCAAAGAGGTCACAGGCTTTCCTACTTGACAAACCAGTAAGGAGTGGGGCTGGGACTTGGACTGGTCTACTTCAGGGCACAGAGGGCACCCGAATCCTGAGCCCTGAGCTCTGCATGTGGATTTGCAGGGAACATGGGAGAATGAACAGCAGGCACCTGCCTTGGGTGGTTTTGGGTCCCCCTAAGCATGGCATAAGGCAGACGTGCACAAAAACTCAGAAAGGGCGCTGCCTTAGGGGGTGAGCTCCCCATGCCTGGACGCATTCAAGATGATGCCTGCGGAGCACTTGGTGGGGATGTCCCAGTGTAGATGGGACAAGCTCAAATGTCCCTATGACTTGGACTTTCACTGACGTGTCTAGGCTTCCGTGTGGGTGTCCGGGGCCAGGTCCTCTGTGCCCACTCCGCAGGCTGGACCTGAGAGTGCGGTCCCGATCCCCTGCTGAGGGAACACTGGGGAGGAAGACCTTCCCTGGCAGGAGAAGAATCAAGTCTGGCTCAGACTTCCCTTGAACCAGGCTTCTACCAGTGGGCATGGCTGGCTAATATACCCTAAAGCAAGAACCAGCCCCCATACACTCTCCCCAGCCACTGGGGTCAGCGAGCGGGCTGGGGGCTGCCTCTTGGCTGGCATCGGGGACGGGAGGGTCACCTTTCTGGCCAGAACCACGTGGAGCGCTGTGTGACACCCCAGGAGCTCAGGCGCACGGTGGAACCGGATCCTCCCTGGCAGCAGCGGCTGCACGTGGCGCCCACCCTCTCCGTGTGGGGACGTGGTAGGATGAGGCTCTCTGAGGACGCATTCTTTGTTCCAGAACCTGGTCCCTTGCTAGGCAGTAGAGCTCTGTGTGGGTGACTTGGGTCCAGGCTTATGGTCAACAGAGTGTGAAACCCAGGTTGCTCCCAAGGCACAAACAGGAGCAAGGTGCACCTTGCCTTGAGCCCAAGGTGGGGTGCAGGCCCCTCCCTCAATCCCTCACCTCCATCTGCAGTCACCCCCAGGCTAAATCCATGGCTAGCAATTCTGAGAGCTCCTGGAACCAGAAGGGGTTCAAGGCAGAGTGGGGGAGGGTCAGGACTTAACCACTTGGGGCAAAGATTTCCAGGGAGAATTGTTTAGGTTGCATTTTTCTCAGTGATATGTCTTTGGAATTTTCAG
Seq C2 exon
GAGAACGCGGTCTCCCTGGAGCCCCTGGAAAGGCAGGACCAGTGGGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085265:ENST00000371806:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(37.7=59.0)
A:
NA
C2:
PF0139113=Collagen=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development