GgaINT0126490 @ galGal3
Intron Retention
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10334386-10335514:+
Coord C1 exon
chr17:10334386-10334511
Coord A exon
chr17:10334512-10335340
Coord C2 exon
chr17:10335341-10335514
Length
829 bp
Sequences
Splice sites
5' ss Seq
AAGGCAGGT
5' ss Score
2.53
3' ss Seq
TACCTTTTATTTTCATGTAGCCA
3' ss Score
6.59
Exon sequences
Seq C1 exon
GTCCTTCAAATCGCTCCAACTCAGTATCATCTTTGGATTTGGAAGGGGAGTCTGTATCAGAGCTCGGTGCAGGTCCGTCTGGGAGCAATGGTGTTGAAGCTCTGCAGCTGCTGGAGCATGAACAAG
Seq A exon
GCAGGTGCAAACTCTCTGAAACAAGTGCCTGTGGTGCTGTGTATGGGAAAGACAAAGTTCTGTGAAAAAAGGTTGAGAAATTAACTAGTTTGGGGCAAAAATAAGTAAATGCTCACCTTGTACAATCAGTTTTGCATTTTTTTTTTTTGCTGCTGTTTTGTTTTCTCTAGAAGTATTTCTTGCAGTTCATAGGAAAAGAAGAGCGTATGGGATTTTGAGACTTAAGTCCTTTGTCAGAAAGTGCATTTACAGTTTTGCTTGATACTTAACTTTCCCTTCAAGGGAATAGGGAGGTCTGGATTGGAGTAGTCTTAGAGCATCTGGCTAGCTTATTTTTAGTATGTATTTGTCAAACACTGGAATGGGTTGCTCAGAGGGGTTTTGGAGTCTCCAGCTTTGTAGATTTTCAAAATGTGACTGGATGTGGCCTTGAGCCAACCTGTAATACACCATGTTCTGTGTAGAGGGGTTGGGATTTCAGTTACCCCTTCCAGCCTCAGCAATTGTGTGAGAAGTTCTTTTTATAGGAATTGTCTTACGTTTCCTGTTAGTGTGTTAGTTTTATCTATTACTTTGTCTATTAGTTTATGTCACCAAATGTATTCGAAGTGTAAGAAAAATCTTGAACTATACTTCGGTGCTTTTAGGCACCATCTCTTGAATAGTATAAGAGTACTTTACAAGTTTTACTTTTAAATGCTATCTCATCTGACAGAGTCAGAGTTTGTGTGGTTTTTTTTTTCCCCCTTCAGTGTACTCCTGTAAATTTTCAATTAGAAGTAGTTGGAGGGGTCTTTCAAAAAACTCTGTACCTTTTATTTTCATGTAG
Seq C2 exon
CCACAACTCAGGATAATCTTGATGACAAGCTCCGTAAATTTGAAATCCGTGATATGATGGGGTTGACTGATGACAGAGATATATCAGAAACTGTGAGTGAAACCTGGAGTACGGATGTCTTGGGTAGTGACTTTGATCCAAATATTGACGAAGATCGTTTACAAGAAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993:ENSGALT00000001466:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.932
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAAATCGCTCCAACTCA
R:
TGCAATTTCTTGTAAACGATCTTCGT
Band lengths:
298-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]