MmuINT0067564 @ mm10
Intron Retention
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34712165-34715330:-
Coord C1 exon
chr2:34715205-34715330
Coord A exon
chr2:34712339-34715204
Coord C2 exon
chr2:34712165-34712338
Length
2866 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
ACTAAATTTGTTTTTGATAGCTA
3' ss Score
5.03
Exon sequences
Seq C1 exon
GTCCTTCCAATCGCTCCAATTCGGTGTCTTCTCTCGACCTGGAGGGAGAGTCTGTATCTGAACTTGGGGCAGGACCTTCTGGGAGTAACGGAGTTGAAGCACTGCAGCTGTTAGAGCACGAGCAAG
Seq A exon
GTAACGTGGTGGAGAACACATCTGTACAGGTAGCAAAGAACGTGCGTGATTTCAGGAAAGGTAGTCTCTTTGCTTGCTGTGAGTTGATTAATGATCATTAAAGTTGCATTTATCCATAGCTCCTTTAGTTTTTAAAAGGTGTTTAGTTGGTAAGTGTATTATTTGGGCTTAAATTATACACAGCAGTATGAGTTACTTTAAATTCTGTAATATTTATTATGTGGTACAATGATAACTACTAAGGGCTCAATAACTTAGGTTAGGGAAAGAACACTACAAATGGTTAAAAGCCCCAAGTTATATGATCTGAGTTTGATCCTTGGAACCCACCTAGTGGAAGAAGAGAGGCAACTCCTATATGTTGTCCTCTGAGCTCCACACACACACACACCATGGCACCAGTGTATGTGTATATACACGCACACATGCAAACAGAAATACATAGGAGGTAGGAGGATGACTCAGTGAGTAAATTGCCTGCCACAAAACATCAGGGCCCAAGTTTGGATCCCCAACAATTAGATAAGAAGCTGGGTTTGTGCACTTAGGTGACAGGTGGGTGATGGGTTGGGAGGAATGGAAGCATGGGAAGATGAAGAGGCAAACACAGGTAGATCCCTGGCTCTCTGACCTCTTGCCTGCACACACATGAGCACTGTACATAAACTCTTAACAAACAGAAGCTTGTTGTTAGGGAGCACATTCACAGCTAAGTGTGATTCTTACACTTTAGTGTACGTGAAAATTACCTAGGGAGCTCTAAGAAAATGTATTTTCCAAGCTGTCCTAGAAATATACTACTGAAAAGGAAAAGAGTGTTACTACTGGAATGTATGGTTTGTATAAATTATTGCCATATTGGCTCCATTTTCAACTTATCGATTAATATTAAATTTATTGCACATAACAGAGAAACCTGAAATTAGTATACAGTCAAGATGAAAAGAATCACATCTTTGACAGGTGTTCTGGGTGATTCCGGTGTAGGAGTGGACAGCCTTCACATGTGAAATACTAAGTTAAGTAAATCAAAGGCTGGAAGTTGGCTCAGTCATTTGTGACAAAACTTTTCCTGCAGAGACACAATACTTGCCTATTCATTCCACTATGGAGCCCACCATAGACCAAAGTCCACGGTGAACCATGACTTTTTTTTTAAAGATTTATTTATTTATTATATTTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTCCAGACCTTCGGAAGAGCAGTCGGGTGTTCTTACCCACTGAGCCATCTCACCAGCCTGAACCATGACTTGTATTGGGGTTACTTATAGGAGCAGAAATGATTCAAAGACCACTGCATAAAGCCTACTCTAGCGTGGTTGACAATTCACAAAGTTGGGAGCCTGGAGCACACTGCACAGCCTGCAGGCTGCTTAACAGGTTGGAGAATGTCCTTTCCAAGTGACTCGGTGTACAACTCTCCCAGGCAGTTCAGCAGGTTTGTGCTGCTGCCAGGCAGCTGGTTTGGTCTCAGATTCTTCTTTGCAGCTTGGCTTTTCTTGGTTCCATTCATCTGAGATGAACTGCACTTTTACTGTTTATACTGGCATGGAGGGAGGGGCCTAGTGAATCTGATCAGTCTCAGGAACTTCCTAAAGCAATTTTCAGTTACCTCCTGCTTAGAGATTTCCTGCAGGATACAATGTTTATAATATTATCAAGATAATGTACTGCTCTTGCACAGTACTCTGGTTCAATCCTAGCACCTTTAGGATGGTTTATATGGGCTCTAGACACCAGGCTTGCATGTGGTACACATACATACATACAGGCAAGGCATTAATATAGATAAAATAATAAAATAAATAAATCTAAAAAGAGGGTGAATTGAAGCCTGGGCATGATGATGCATACCTTTAATCCTAGCACTCAGGAAGCAGGCAAGCTAGCTTGGTTTATGTATAGAGACCCTATCTTTAAAAAAAATTAAAAAAACAAGCAAGCAATCAAATTGAGAGCTAGATGTGGTAACCTATGCCTGTAATCCTATTATTGAGAGGGTGAAGTAAGAGGATCATAAATTTATGCTATTTTGAGGCCTTGTCTTATAAACAAAAACACCTACACCAAAACCCAAGTCAAAGTTTTACAAAATGGAAATTGACAAGAATGACTTATGGGTCTAGGTAGAAGCTCAGTGGGTAAGAGTGCTTGCTATGCAAGCATGAGTGCTTTAGTCTGAGTCTCTAGCATCATGTCAAAGCCAGGCGTAGCCATGCGTGCCTATACCCTCAGCACTGGGCCACAGACAGTGCAGGCCTTGAAGCGTGCTTAGCTGAAGGTGCTGAGCTTTCAGTTCAGTGGAAAGTGGAAAGCAGTGGCAGGGGTACCTCTGGCTGCTGAATCCATGTGCACATCATATACACAGAGCAAGCTGAAGAAAAGTGATCTGGGAAAGAAGGAAAACTCTAGAATTTACACTTGAGCTATTGCCAAGTGAAATAGTTTACATATGGGTTTACCACCTAATTATTAGCACAATGATTGGATCTGGTAAGCTACCCCAAATAGTTATTTTTACATTCCTGTCTGGGTTAGTTTTTCTCATTTAGACTGGGCACATCTGTCTCCTTTCAGCAGTGGTAAGGTGGAGGTTGGGAGTGTGTGGGGGAGTCTCTACTAATCTTAACTGGGTTAATTAGTCAGTGGGGAGCAGGCTGGAACTACGTGCTTATTAATGATAAAATGAATAACCTGACAATTTTTTCAGGTTAACCAAGAAGTTGTAGCTGTGCCACCATTTGTAAAGTGACTAAATTTGTTTTTGATAG
Seq C2 exon
CTACAACACAAGATAATCTTGATGATAAACTGAGGAAGTTTGAGATTCGTGACATGATGGGACTAACAGATGACAGGGACATATCCGAGACTGTGAGTGAGACCTGGAGCACTGATGTCCTGGGAAGTGACTTCGACCCGAACGTTGATGAAGATCGTTTGCAAGAGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867:ENSMUST00000102800:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.998 A=NA C2=0.907
Domain overlap (PFAM):
C1:
PF153241=TALPID3=FE(19.3=100)
A:
NA
C2:
PF153241=TALPID3=PD(3.3=12.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types