GgaINT0126626 @ galGal3
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:691166-691834:+
Coord C1 exon
chr17:691166-691305
Coord A exon
chr17:691306-691670
Coord C2 exon
chr17:691671-691834
Length
365 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GAATCTCTCTTTCCTTTCAGAGA
3' ss Score
9.95
Exon sequences
Seq C1 exon
CAAAGTTCTGGAAGAAAGGATTTGGACCGATCTTTTTCTATACTGGTAATGAAGGCAACATCTGGACTTTTGCTGAGAACTCGGACTTCATATTTGAGTTAGCAGAGCAGCAGCAAGCTCTTGTGATTTTTGCTGAGCAT
Seq A exon
GTGAGTATGGTAGTCATTGTGCACGCTGAAGAGTTGTGCTAACGTTACCAACTTCAGCTTTCTCCATGTCCAGAACAACAGTTGCATCTCTTGCCATGAAGTTGGGGCATTCCTGCCACGGGCTTTCTCATCATGGCAGCAGCTCTGGTTTTCTGTCCATCCTCTCTAGAGTCTAGAGAATATGTTCTTGAGGTCTGTGTTTATCTCATATAAGGCAGCTTCAGGAGACAAGGCACTTGCTCAGTTACGAATTAGTTGGTGAACGCTGTGTGTGTTTCCACTTCCTGTCTGTGCACACTTATCCCAGCCCTGCAGCGAGGACAGGGTGACACCAGCATTTCTGCAGAATCTCTCTTTCCTTTCAG
Seq C2 exon
AGATACTATGGGAAATCTCTTCCGTTTGGACTTGAGTCAACGCAGCTAAAGAATACTCATCTGCTCACTGTGGAACAAGCCCTTGCTGACTATGCAGTGCTAATTACTGAGCTTAAGCAGCAGTATGGAGCTGCAGGCTGCCCTGTCATTGCTTTCGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.7=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCTGGAAGAAAGGATTTGGACC
R:
CTGCCTCCGAAAGCAATGACA
Band lengths:
302-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]