RnoINT0050875 @ rn6
Intron Retention
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2572597-2572982:-
Coord C1 exon
chr3:2572843-2572982
Coord A exon
chr3:2572761-2572842
Coord C2 exon
chr3:2572597-2572760
Length
82 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
TCGCTTCCTTCTTCCTGCAGCGG
3' ss Score
11.28
Exon sequences
Seq C1 exon
ATAAGTTCTGGAAGATGGGCGAGGGGCCCATTTTCTTCTACACAGGGAATGAGGGGGATATCTGGTCCCTCGCTAACAACTCTGGCTTCATAGTGGAACTGGCAGCCCAGCAGGAGGCCCTGCTGGTCTTTGCTGAGCAT
Seq A exon
GTAGGTACCAGGGCACTTCCTGAGCTGAGGGAGGTGGGGAACACAGAGGCAGCGGTTAGCCATCGCTTCCTTCTTCCTGCAG
Seq C2 exon
CGGTATTATGGGAAATCGCTTCCATTCGGTGTGCAGTCCACACAGCGGGGATACACACAGCTGCTGACTGTGGAGCAGGCGCTGGCTGACTTCGCCGTGCTGCTCCAGGCCCTGCGGCACAATCTTGGGGTCCAGGATGCCCCCACCATAGCCTTTGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640:ENSRNOT00000017271:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.7=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACAGGGAATGAGGGGGA
R:
GTCAGCAGCTGTGTGTATCCC
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]