HsaINT0051829 @ hg19
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140008317-140008834:-
Coord C1 exon
chr9:140008695-140008834
Coord A exon
chr9:140008481-140008694
Coord C2 exon
chr9:140008317-140008480
Length
214 bp
Sequences
Splice sites
5' ss Seq
CACGTGGGT
5' ss Score
4.46
3' ss Seq
TCAATGGCACGTTCCCCCAGCGC
3' ss Score
6.5
Exon sequences
Seq C1 exon
ACAGGTTCTGGGTCCGGGGCGAGGGGCCCATCTTCTTCTACACTGGGAACGAGGGCGACGTGTGGGCCTTCGCCAACAACTCGGCCTTCGTCGCGGAGCTGGCGGCCGAGCGGGGGGCTCTACTGGTCTTCGCGGAGCAC
Seq A exon
GTGGGTGCCGGGCGGGGTCGCGGGCGGGGTCGCGGGGCACGTGGGTGCCGGGCGGGGTCGCGGGCGGGGGTCGCGGGGCACGCGGGTGCCGGGCGGGGTCGCGGGCGGGGGTCGCGGGGCACGCGGGTGCCGGGCGGGGTCGCGGGCGGGGGTCGCGGGGCACGCGGGTGCCGGGCGGGGTCGCGGGGCCGGGCTCAATGGCACGTTCCCCCAG
Seq C2 exon
CGCTACTACGGGAAGTCGCTGCCGTTCGGTGCGCAGTCCACGCAGCGCGGGCACACGGAGCTGCTGACGGTGGAGCAGGCCCTGGCCGACTTCGCAGAGCTGCTCCGCGCGCTACGACGCGACCTCGGGGCCCAGGATGCCCCCGCCATCGCCTTCGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-DPP7:NM_013379:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.318
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.7=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTCTGGGTCCGGG
R:
CCCGAGGTCGCGTCGTAG
Band lengths:
269-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)