DreINT0059760 @ danRer10
Intron Retention
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28560732-28562715:+
Coord C1 exon
chr5:28560732-28560871
Coord A exon
chr5:28560872-28562551
Coord C2 exon
chr5:28562552-28562715
Length
1680 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
AACTTTGCTTTGATCTCTAGAGG
3' ss Score
6.36
Exon sequences
Seq C1 exon
ATAAGTACTGGAAGAAAGGCTATGGACCCATTTTCTTCTACACGGGCAATGAGGGGGACATAAGTGAGTTTGCACGTAATTCGGGCTTCATGGTAGAGCTGGCAGCAGCGCAGGGAGCCCTGCTCATATTTGCTGAACAT
Seq A exon
GTAAGTTTCCCGAAACTGTCGTGAATCATATGACTATGGAGGAAGTAATGAAGTGGATATGTAGACTCATGATACGCAATACTTGTCAGGAAGCTTGGAAATAAAATAAGATGAAAGAAGTCTTTTAGGTATCAATTTCATAGATGAATTTGATGCAAAGACGTATTGTGAAAGTTTGTTAAGATTGAAAAACATCACAGTTTTTATGTATTTTAAAATGTAAATATATCCCTTCATGTCCAAGCTGGAAAACATAATAAAAGCCATTGTTAATAGTTGATATACAACAGTTATATATCAATATTGGAAAAATGTGGCATTGTGATATTTTGTTTTGCTGCGATATAAATACAGTTTGACCAGATAGCTTGAAAAGCTCTTTTCGGACAGAGGTTATTGATTTAGACTGATAGAGATTATTCCATAGGGCAGTGGTTCCCAAAGTGGGGGTTGTGGGAAAACGAGAAGGAGGCGCTTGGTGATTTCCAAAAGTCAAATAAATGTTATTAAACTACTAGAATTACCACGTTTTAACCATAACCCACAGATGATAAAAATAGTCGTTTCTAATAGTAAAAAAACAACAACATGCCAATGAAAAGCCTTCAGCCTTTAAATGATTTTTTTTCATAGGATTGTTTATTATGTTAGACTAGCAACACTGCAATAGCGTCAGCTGTAGCAGATTTATTTTATAGCACCAGGTTAAACTTTCACCTTTATGGCAATCAAGTACATTCAAATACAGGTCCCAACTGAACATTGAGAATGATATCTGAGTGGTGGTCTGCAAAATTAAACCAAGAATAGACTTGTGCTGAAAACATTGTGCCCACCAGTCTCTTCAGCGAAGGTTAAATTTAAAAAAAAAAAAAAATTTCGGTGTTTTCACCTTTAATGGATAGGACAGTAGAGATTATTGACAGGAAAGCATGGGGAGCAGAGAGAGGGGAAGGATCGGCATAGGACCGTGTGCTGGGAATTTAACTCGGGTTGCCGTGAGCACCGAAGTACATGTGTCGACGCACTAACCACTACACTACTGCAGCCAAGAGCTAAGGTTAATATTAAGCAAATTTATAAATGACTATAAATCGTATGGTTGTTAGGCTGTTGCACTTTTTTATGTTGTCAATATGCTTGCGTTTATATAGGCCTATTATTGTGTGTGCAACGTTTGAATATTTATGACCATCTCCAAAGAATATAGGAGTCACGAATCACTGGCATTGTTATTTTAGGGGTTGCAGGCTGAAAAGTTTGGGAACCCCTGCTATAGGGGAGTGAAATCATGCATAAAATATTATAAACAATTTAAAAGTAAAAAAGAATACAATAGAACAAAGATGAATTATTTACTACAGTTTCCACAAACTATTTACTACACCCGTTCTCAAAATTGATAATGTTTTTGAGCATCAGTTCAGCATATCAGAGTCATTTCTGAAGGATCTTGTGACACTGAAAACTGGAGTAATGAAACTAAAAATTCAGCTTTGCTTTTTCGTGAATTAATTACACCTAAATGAAATAAAAATAGAAACTATATTTTGAATAGTAGCAATATTTCACAATATTACTGCATTTATGTAGAAAGCATTGTAAAGAGATAAAAGACGTTTTACAAAAATGGTCAAGTATATCACGTCCACTAATTGAAAACTTTGCTTTGATCTCTAG
Seq C2 exon
AGGTACTATGGGAAATCTCTTCCATTTGGGAAGAATTCTTTTAAAATCCCTGAGGTGGGGTTGTTGACGGTGGAGCAGGCCCTCGCAGACTATGCTGTCATGATCACAGAGCTGAAGGAGGAGCTGGGAGGTCAAACATGTCCCGTCATTGTCTTTGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750:ENSDART00000037891:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.7=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACTGGAAGAAAGGCTATGGAC
R:
CTTCCACCAAAGACAATGACGG
Band lengths:
302-1982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]