GgaINT0126680 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9072885-9073923:+
Coord C1 exon
chr17:9072885-9072966
Coord A exon
chr17:9072967-9073807
Coord C2 exon
chr17:9073808-9073923
Length
841 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGAT
5' ss Score
3.95
3' ss Seq
GATTTCTTTCATCTTATTAGAAC
3' ss Score
6.81
Exon sequences
Seq C1 exon
CTTTTGTTCATAAAAAAGGATATTGGAAAAGAGGAAGAAAATCTTCAAATAATACTTGGACAAATTAACAAGCATAAGCTAG
Seq A exon
GTAGATTTCATTCTGTGCAGACTGAAAATAAATATACTCTAAGATGCTGGTTGTACATCTGTGCAATCAGTCTGTACATCAGTCTTTTTAAATACTGAGAATAGCTGCAGAGAAAGAGTTCCTAGTTAGAGACACAGACTCCAACACAGAGCTGACTAGTTACCCTCTGCTTGAGTCGAGACAGTGCTTTGTGTTACTTTGTTCTTGGGATTTGATTTTCTCACTTCAATGAGGAAAACAAATCTACCATGGAAACTAAAGCTTCCATGCTAGTGCTGTGTGACAGAGCTGGCTGCTTGTGGCACATCCACAGAAGACATCTGGATTGGAGGAGGAACAGAGGATTACCCTTCAGACAGTTGTATCCTGTCAGATGGTGGAAAGTGTAATCAGCAGCAGCTTACAAACCTGTACTTCCTCCTAAAAAAAAAAAGAAAAAAAGAAAATTGACTTCATTGTCTACGAGTCAGATACTTGTCCTGGAATAACACCCTAGGAGCAAAGGAAAGAGGAGACAGAGGAACCTGCAACTTTCTAGTAGAACGGTGTCGGATATAATGACTGGTGTGTCTGACACACCAAGTGAATATGATTATGTTTTTCAGGGATTGTATCAGCATTATTTCATTCCATTTCTGCCCCCCCACTCCCTTCCCCCAATGTCTTTTTAGATAATAGAATTAATAATTCAATTAATAATAGAATTATAATTCTATTATTATTATTATTATTATTATTATCTATTAATATATATCTATAATAGAATAATAGAATAAAATAATAATAGATAATAGTATTTAATGTGCTTTATAATAACCTTTGATTTCTTTCATCTTATTAG
Seq C2 exon
AACTGAAACATGTTCTGGAAATGTTGGAGATAGAAAATAATGAACTTCAGGGTTTGAAACTACAACATAATCAAAAGGTCAATGAACTAGAGAAGACTCAGGTTGCAGTTCTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGATATTGGAAAAGAGGAAGA
R:
AGAACTGCAACCTGAGTCTTCT
Band lengths:
182-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]