GgaINT0126680 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8368151-8369267:+
Coord C1 exon
chr17:8368151-8368310
Coord A exon
chr17:8368311-8369151
Coord C2 exon
chr17:8369152-8369267
Length
841 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGAT
5' ss Score
3.95
3' ss Seq
GATTTCTTTCATCTTATTAGAAC
3' ss Score
6.81
Exon sequences
Seq C1 exon
GAAATAAAGCTCCTTCTGGAAGATCTTAATGCTGAGAGGAGAGAACTGGATGTCCAAATTGATGAGAAGAGAGCACAGCTTTTGTTCATAAAAAAGGATATTGGAAAAGAGGAAGAAAATCTTCAAATAATACTTGGACAAATTAACAAGCATAAGCTAG
Seq A exon
GTAGATTTCATTCTGTGCAGACTGAAAATAAATATACTCTAAGATGCTGGTTGTACATCTGTGCAATCAGTCTGTACATCAGTCTTTTTAAATACTGAGAATAGCTGCAGAGAAAGAGTTCCTAGTTAGAGACACAGACTCCAACACAGAGCTGACTAGTTACCCTCTGCTTGAGTCGAGACAGTGCTTTGTGTTACTTTGTTCTTGGGATTTGATTTTCTCACTTCAATGAGGAAAACAAATCTACCATGGAAACTAAAGCTTCCATGCTAGTGCTGTGTGACAGAGCTGGCTGCTTGTGGCACATCCACAGAAGACATCTGGATTGGAGGAGGAACAGAGGATTACCCTTCAGACAGTTGTATCCTGTCAGATGGTGGAAAGTGTAATCAGCAGCAGCTTACAAACCTGTACTTCCTCCTAAAAAAAAAAAGAAAAAAAGAAAATTGACTTCATTGTCTACGAGTCAGATACTTGTCCTGGAATAACACCCTAGGAGCAAAGGAAAGAGGAGACAGAGGAACCTGCAACTTTCTAGTAGAACGGTGTCGGATATAATGACTGGTGTGTCTGACACACCAAGTGAATATGATTATGTTTTTCAGGGATTGTATCAGCATTATTTCATTCCATTTCTGCCCCCCCACTCCCTTCCCCCAATGTCTTTTTAGATAATAGAATTAATAATTCAATTAATAATAGAATTATAATTCTATTATTATTATTATTATTATTATTATCTATTAATATATATCTATAATAGAATAATAGAATAAAATAATAATAGATAATAGTATTTAATGTGCTTTATAATAACCTTTGATTTCTTTCATCTTATTAG
Seq C2 exon
AACTGAAACATGTTCTGGAAATGTTGGAGATAGAAAATAATGAACTTCAGGGTTTGAAACTACAACATAATCAAAAGGTCAATGAACTAGAGAAGACTCAGGTTGCAGTTCTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTCCTTCTGGAAGATCTT
R:
TCTAGAACTGCAACCTGAGTCT
Band lengths:
270-1111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]