HsaINT0033508 @ hg19
Intron Retention
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123922421-123924249:+
Coord C1 exon
chr9:123922421-123922580
Coord A exon
chr9:123922581-123924133
Coord C2 exon
chr9:123924134-123924249
Length
1553 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GCTTTGTTTCTATCCCTTAGAAC
3' ss Score
9.25
Exon sequences
Seq C1 exon
GAAGTAAAATCTCTTCTGGAAGAACTGAGTTTTCAGAAAGGAGAACTAAATGTTCAGATTAGTGAAAGAAAAACTCAACTTACACTTATAAAGCAGGAAATTGAAAAAGAGGAAGAAAATCTTCAGGTTGTTTTAAGGCAGATGTCTAAACATAAAACCG
Seq A exon
GTAAGTTTAAAGGAAAACAATCATACAAAGTTTGAGGTTGGAAATGTCTGTATTACAAGTCACAGAAAAAATAACAAATGGCCAAAAAAACTTTAAAGTTTAACCTTACTGCTAATAAGCAAAGCAAGCAGGTTATAAAAGGAATATGATATTTTCTGCCATTTTAATTGATAAACTTTATTTAAAAGCAAAATAATCATGCTCATTGCTGATCAGAGTGTGCTGAAAGAAGAGCACTCACAGTCTATCAATTGAGGTATAAACTGGAACAATCTCCCAGTGTTTCAAGGCTCTTAAAATTCACACCTGTTGAACTAGTCAGCCCATTTCTACTCCTCCAGAAAGGGCAAGTATGTACATCGCAGCAATATTTATAATGACAAAATTTGGAAACAGGCTGGGTGTGGTGGTTCATGCCTATAATCCCAGCTCTTTGGGAGGCTGAGGCAAGAGGATTGCTTGAGCCCAGGAGTTCAAAACTACCTGGGCAATGTATGAGACCCCATCTCTACAAAAATATTCAAAAATTAGCGATGCACATTGATGTGCACCTATAGTCCCAGCTATTCAGAAGGCCAAGCAGGGAGGATCCCTTGAGCTCAGGAGATCAAGGCTGCAGTGAGCTATGATTATGCCACTATGCTTCAGCCTGGGAAACAGAGGAAGACCCTGTTCCACCACACCCCCCAAAAAATTGGAAACAGATGACCAATTTAAAAGCCATATTTTTAACCTTTAATGACATGCAAACATGACCATGAGAAGAATGAAAAAAAGTAGGTAAAAAATGAATATGGAGTATAGTCCCAGTTTATTTTAAAATGTGTGAGAGTGTGTGTGTGTGCGCGCGTGCTCACGCGCACACACATGCATTCTTAGAAGGAAATACATCAAAATGCTATTGTAAAAGTGATTTGGGGTGGTGAAATAATGGTGGGTTTTCATTTTTTTCTCTTATGCTTTTTTTTTGTATTTTCCAGCTTTTCTACAGTAAGCAAGTATCTCTATGATCAGAAAAAAAGTTAATATTTAAATATCTGTATTTCAAAGGCCAAAAAATTGTTATATAAATCTCAGTCTGTATTTCAAAGTATTTTTAATTTATTTTGATCAATTTTATATAAAATGCTTTTAGTTGATTCTTTTATGTAGAAGCAAATGCTTTGGAACCAGATCTTTGTTAATTAAATGTTTTTGTTAAAATGTTTGTCTGTTTATTTATTTATATAGAGATGGGATCTTGCTCTGTCAACCAGGCTAGTCTCAAACCCCTGGGCTCAAGCAGTCCTTACACCTCAGCCTGCCAAATGGCTGGGATTACAGGTGCGTGCTGCTGCACCTGGCTTGTTAAAATGTTTTTAACAAATTAAATAGTATTTAGCGATACTTTTAGAGAATTTTTTATTAAAAATAAAATTAGCACCATTAATTCAGCTCAACAAAATTTTTAAAATTGTCTTGTATTAGTCAATAGCATTGTTTTCTGTTTCATTTTGTAAATGTTTTCCAAGTTCATTTAATATCATGGACCATGCTTTGTTTCTATCCCTTAG
Seq C2 exon
AACTAAAGAATATTCTGGACATGTTGCAACTTGAAAACCATGAGCTACAAGGTTTGAAGCTACAACATGACCAAAGGGTATCTGAATTAGAGAAGACTCAGGTGGCAGTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-CEP110:NM_007018:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF140101=PEPcase_2=FE(50.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTCTTCTGGAAGAACTGAGT
R:
CTCTAGCACTGCCACCTGAGT
Band lengths:
270-1823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)